Re: [R-pkg-devel] problems with .mod files

2019-02-27 Thread Rémi Piatek
These *.mod files are automatically created during compilation whenever there is a module in the corresponding source file. They should not be in the src folder of your package when you submit it to CRAN, but they should not be a problem when they get created in this folder during compilation.

Re: [R-pkg-devel] Bioconductor dependencies => Windows checks failed

2019-02-27 Thread Matthew Hall
Sure, sorry. http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00check.log http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00install.out (the typo in the title is obviously gone) On 27 February 2019 at 14:42:23, Martin

Re: [R-pkg-devel] Bioconductor dependencies => Windows checks failed

2019-02-27 Thread Duncan Murdoch
On 27/02/2019 9:13 a.m., Matthew Hall wrote: Hello, I’ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error: Error: object 'as_data_frame' is not exported by

Re: [R-pkg-devel] Bioconductor dependencies => Windows checks failed

2019-02-27 Thread Martin Morgan
Bioconductor 3.8 is the current release version of Bioconductor, and should be used by CRAN for current release versions of R. This seems perhaps like a stale installation on the Windows machine. A link to the actual check report would be helpful. Martin On 2/27/19, 9:25 AM, "R-package-devel

[R-pkg-devel] Bioconductor dependencies => Windows checks failed

2019-02-27 Thread Matthew Hall
Hello, I’ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error: Error: object 'as_data_frame' is not exported by 'namespace:tidytree' The official ggtree developer

Re: [R-pkg-devel] Debian check string include

2019-02-27 Thread Dirk Eddelbuettel
On 27 February 2019 at 14:17, Horia Yeb wrote: | rcpp_throwchart.cpp:6:10: fatal error: String.h: No such file or directory Did you mean the standard C header string.h? Or did you mean Rcpp's own Rcpp/String.h ? It is included for you by Rcpp.h. | Also would it be possible to submit a

Re: [R-pkg-devel] Debian check string include

2019-02-27 Thread Duncan Murdoch
On 27/02/2019 8:17 a.m., Horia Yeb wrote: Hi all, I submitted my package today on CRAN and from the automatic check I get a note in both Windows and Debian, but from what I heard it is perfectly ok and to be ignored. "Check: CRAN incoming feasibility, Result: NOTE Maintainer: 'John Doe>' "

[R-pkg-devel] Debian check string include

2019-02-27 Thread Horia Yeb
Hi all, I submitted my package today on CRAN and from the automatic check I get a note in both Windows and Debian, but from what I heard it is perfectly ok and to be ignored. "Check: CRAN incoming feasibility, Result: NOTE Maintainer: 'John Doe>' " But I also get an ERROR in the Debian check