Re: [R-pkg-devel] Suppressing long-running vignette code in CRAN submission

2023-10-17 Thread John Harrold
a PDF file yourself, then use the "as.is" feature of the > R.rsp > | >> | package. > | >> For completeness, that approach also works directly with Sweave. > Described in > | >> a blog post by Mark van der

Re: [R-pkg-devel] package submissions no auto-processed message

2023-08-27 Thread John Harrold
> > Best, > Uwe Ligges > > > > On 28.08.2023 00:37, John Harrold wrote: > > Oh I'm sorry. It's the ruminate package. > > > > On Sun, Aug 27, 2023 at 2:22 PM Uwe Ligges > > > <mailto:lig...@statistik.tu-dortmund.de>> wrote: > > > &g

Re: [R-pkg-devel] package submissions no auto-processed message

2023-08-27 Thread John Harrold
Oh I'm sorry. It's the ruminate package. On Sun, Aug 27, 2023 at 2:22 PM Uwe Ligges wrote: > > > On 27.08.2023 22:51, John Harrold wrote: > > Howdy Folks, > > > > I submitted a package on Friday. I got the normal email where you have to > > click on the lin

[R-pkg-devel] package submissions no auto-processed message

2023-08-27 Thread John Harrold
Howdy Folks, I submitted a package on Friday. I got the normal email where you have to click on the link to confirm. Then I got an email saying that the package was uploaded. Normally after that I get an email saying the package was auto-processed. That generally doesn't take very long (typically

Re: [R-pkg-devel] Check package without suggests

2023-07-18 Thread John Harrold
ou can just do > > if (requireNamespace("", quietly=TRUE)) { > # do the tests involving > } > > Wasn't that enough? > > Best, > Serguei. > > > Le 18/07/2023 à 16:37, John Harrold a écrit : > > Howdy Folks, > > > > I recent had a pack

[R-pkg-devel] Check package without suggests

2023-07-18 Thread John Harrold
Howdy Folks, I recent had a package start failing because I wasn't checking properly in my tests to make sure my suggested packages were installed before running tests. I think this is something new running on CRAN where packages are tested with only the packages specified as Imports in the

Re: [R-pkg-devel] Missing ggPMX causing failure for nlmixr2rpt

2023-06-03 Thread John Harrold
gPMX", verbose = FALSE) could be > enough > > There's also an example that seems to be failing, I didn't understand > the reason behind it but it might be related. > > Best, > > Lluís > > > On Fri, 2 Jun 2023 at 02:49, John Harrold > wrote: > > > >

[R-pkg-devel] Missing ggPMX causing failure for nlmixr2rpt

2023-06-01 Thread John Harrold
Hello, I recently got a "Dear Maintainer" email from Brian Ripley. It was concerning the nlmixr2rpt package I maintain: https://cran.r-project.org/web/checks/check_results_nlmixr2rpt.html It looks like there is an error on r-release-linux-x86_64 that is causing it. If I'm reading that correctly

[R-pkg-devel] CRAN package isoband and its reverse dependencies

2022-10-05 Thread John Harrold
Howdy Folks, I got a message from CRAN today telling me that I have a strong reverse dependency on the isoband package. But I'm not alone! It look like more than 4700 other packages also have a strong dependency on this. Is there some organized effort to deal with this? Thanks John

Re: [R-pkg-devel] Examples taking too long depend on object that takes a while to generate

2022-09-15 Thread John Harrold
ere '(2)' is really much closer to the > > >> "install time" you mention. > > >> > > > > > I meant building the tarball, and assumed that was what Ivan was > talking > > > about as well. > > > > >

Re: [R-pkg-devel] Examples taking too long depend on object that takes a while to generate

2022-09-13 Thread John Harrold
on-linear with data size? 27 seconds of user CPU is an awful lot > of processing these days. > > Greg > > On Wed, 14 Sept 2022 at 13:21, John Harrold > wrote: > >> Hello, >> >> I'm working on submitting a new package. I've created examples for each of >> the fu

[R-pkg-devel] Examples taking too long depend on object that takes a while to generate

2022-09-13 Thread John Harrold
Hello, I'm working on submitting a new package. I've created examples for each of the functions. Most of these functions depend on an R object that uses architecture-specific compiled code. To create that object can take between 10-20 seconds. The function that creates it will cache it in the

Re: [R-pkg-devel] if statements in NAMESPACE file

2021-09-30 Thread John Harrold
I don't have cigwin installed but from the command window, the terminal that Git installs, RGui, and RStudio they all return "windows" for the .Platform$OS.type for me. On Thu, Sep 30, 2021 at 2:38 PM Duncan Murdoch wrote: > On 30/09/2021 5:21 p.m., Jeff Newmiller wrote: > > What if you are on

Re: [R-pkg-devel] Spelling and manual CRAN inspection

2021-07-16 Thread John Harrold
I have a list of words, acronyms and initialisms that commonly get flagged as misspelled words when I submit updates. I generally just put an explanation for each one in the "optional comment" section of the submission form. It's pretty simple and seems to work out well. On Fri, Jul 16, 2021 at

Re: [R-pkg-devel] Question about preventing CRAN package archival

2021-06-02 Thread John Harrold
To add another option. In the past when this has happened to me I've found other packages that provide similar functionality. I'm assuming that is.square just checks the number of columns == number of rows? And the others can probably be implemented pretty easily. On Wed, Jun 2, 2021 at 10:41 AM

Re: [R-pkg-devel] Number of cores in examples

2019-09-15 Thread John Harrold
of Computer Science > University of Manitoba > maxturgeon.ca > > > ------ > *From:* R-package-devel on behalf > of John Harrold > *Sent:* September 15, 2019 11:31:38 AM > *To:* Uwe Ligges > *Cc:* r-package-devel@r-project.org > *Subject:*

Re: [R-pkg-devel] Number of cores in examples

2019-09-15 Thread John Harrold
: > > > On 15.09.2019 05:39, John Harrold wrote: > > Thanks Uwe, > > > > Is there a way to find out on my end where this is happening? > > Yes, simply set the env var > _R_CHECK_LIMIT_CORES_=true > to reproduce. > > Best, > Uwe > > > > &g

Re: [R-pkg-devel] Number of cores in examples

2019-09-14 Thread John Harrold
Thanks Uwe, Is there a way to find out on my end where this is happening? Thanks john On Fri, Sep 13, 2019 at 10:51 PM Uwe Ligges wrote: > > > On 14.09.2019 03:33, John Harrold wrote: > > Hello, > > > > I recently submitted a package for consideration in CR

[R-pkg-devel] Number of cores in examples

2019-09-13 Thread John Harrold
Hello, I recently submitted a package for consideration in CRAN. One of the comments was: Please ensure that you do not use more than 2 cores in your examples. I do not believe my package does this. Is this a general comment for a package that requires doParallel or was this triggered because

[R-pkg-devel] replacing previous import

2019-08-19 Thread John Harrold
Howdy Folks, I'm getting the following warning: Found the following significant warnings: Warning: replacing previous import ‘gdata::combine’ by ‘gridExtra::combine’ when loading In the R scripts I'm using #'@importFrom gridExtra grid.arrange To only import the function I want, but I'm not

Re: [R-pkg-devel] Misspelled words in DESCRIPTION

2019-08-19 Thread John Harrold
submission, clarifying that this is indeed > a false positive. > > cheers > Ben Bolker > > On 2019-08-19 6:13 p.m., John Harrold wrote: > > Hello, > > > > I am attempting to submit my first package to CRAN. I believe I've > > successfully gotten rid of al

[R-pkg-devel] Misspelled words in DESCRIPTION

2019-08-19 Thread John Harrold
Hello, I am attempting to submit my first package to CRAN. I believe I've successfully gotten rid of all the notes, but there is one that I'm unable to eliminate. In the DESCRIPTION file in both the Title and Description fields I use the term PKPD. This stands for Pharmacokinetics and