Has anybody managed to create binary packages for os/x with openmp
enabled?
Is this the best place to ask?
Our working non-openmp enabled build is here,
https://travis-ci.org/github/OpenMx/OpenMx/jobs/706741686
Thank you.
--
Joshua N. Pritikin, Ph.D.
Virginia Institute for Psychiatric and
Ah, brilliant. Thanks.
On Sun, Jun 14, 2020 at 11:28:17AM -0400, Duncan Murdoch wrote:
> On 14/06/2020 10:59 a.m., Joshua N Pritikin wrote:
> > On Sun, Jun 14, 2020 at 09:17:32AM -0400, Duncan Murdoch wrote:
> > > knitr::opts_chunk$set(eval = !is_CRAN)
> >
> > This
On Sun, Jun 14, 2020 at 09:17:32AM -0400, Duncan Murdoch wrote:
> Since you're using Rmarkdown, you can use a variable for the eval
> chunk option, e.g. put this in your setup chunk:
>
> knitr::opts_chunk$set(eval = !is_CRAN)
This works except for in-text `r 1+1` code fragments. Is there an opti
Ah, thank you!
Sorry for the duplicate posts.
On Sun, Jun 14, 2020 at 09:17:32AM -0400, Duncan Murdoch wrote:
> On 13/06/2020 1:29 p.m., Joshua N Pritikin wrote:
> >
> > I'm trying to include vignettes that take much too long for CRAN check.
> >
> > At the beg
tandardGWAS.Rmd' using rmarkdown
> --- re-building 'TwoFactorModel.Rmd' using rmarkdown
> --- re-building 'UserSpecifiedGWASModels.Rmd' using rmarkdown
> --- re-building 'growth.Rmd' using rmarkdown
> Error: Vignette re-building failed.
> Execut
tandardGWAS.Rmd' using rmarkdown
> --- re-building 'TwoFactorModel.Rmd' using rmarkdown
> --- re-building 'UserSpecifiedGWASModels.Rmd' using rmarkdown
> --- re-building 'growth.Rmd' using rmarkdown
> Error: Vignette re-building failed.
> Execut
tandardGWAS.Rmd' using rmarkdown
> --- re-building 'TwoFactorModel.Rmd' using rmarkdown
> --- re-building 'UserSpecifiedGWASModels.Rmd' using rmarkdown
> --- re-building 'growth.Rmd' using rmarkdown
> Error: Vignette re-building failed.
> Execut
terminate called after throwing an instance of 'std::runtime_error'
what(): MxComputeLoadData: out of data (record 250 requested but only 199
in file)
What solution is recommended?
Thank you.
--
Joshua N. Pritikin, Ph.D.
Virginia Institute for Psychiatric and Behavioral Genetics
Virginia Commonweal
} catch (...) {
// clang gets here
which works on both compilers. I don't know why clang skips the first
catch clause.
--
Joshua N. Pritikin, Ph.D.
Virginia Institute for Psychiatric and Behavioral Genetics
Virginia Commonwealth University
PO Box 980126
800 E Lei
ect to see OS/X builds?
Thank you.
--
Joshua N. Pritikin, Ph.D.
Virginia Institute for Psychiatric and Behavioral Genetics
Virginia Commonwealth University
PO Box 980126
800 E Leigh St, Biotech One, Suite 1-133
Richmond, VA 23219
http://exuberant-islan
We noticed,
https://cran.r-project.org/web/checks/check_issue_kinds.html
Are test results from alternative BLAS/LAPACK implementations available
somewhere?
--
Joshua N. Pritikin, Ph.D.
Virginia Institute for Psychiatric and Behavioral Genetics
Virginia Commonwealth University
PO Box 980126
For example, mvnfast CRAN binaries could take advantage of OpenMP.
The OpenMx team has been building Mac OS binaries with openmp enabled
for years. We compile with gcc and bundle the necessary openmp enabled
libraries with the binary. Why couldn't CRAN do this?
--
Joshua N. Pri
nd distribute openmp
enabled binaries.
--
Joshua N. Pritikin
Department of Psychology
University of Virginia
485 McCormick Rd, Gilmer Hall Room 102
Charlottesville, VA 22904
http://people.virginia.edu/~jnp3bc
__
R-package-devel@r-project.org mailing list
h
SHLIB_OPENMP_CXXFLAGS (when there is compiler
support) or not? It seems not.
--
Joshua N. Pritikin
Department of Psychology
University of Virginia
485 McCormick Rd, Gilmer Hall Room 102
Charlottesville, VA 22904
http://people.virginia.edu/~jnp3bc
--- Begin Message ---
I tried. Although it is pretty
On Mon, Aug 24, 2015 at 10:14:10AM -0500, Dirk Eddelbuettel wrote:
> On 24 August 2015 at 11:02, Joshua N Pritikin wrote:
> | Currently, we have a configure script for package OpenMx that only
> | enables openmp if gcc is the compiler (OS X only). Nice to hear that
> | openmp is
On Mon, Aug 24, 2015 at 09:29:34AM -0500, Dirk Eddelbuettel wrote:
> On 24 August 2015 at 09:14, Joshua N Pritikin wrote:
> | So I take that answer as, "No, CRAN cannot possibly enable openmp for
> | binary builds." Is that correct?
>
> The CRAN maintainers are not wi
nary builds." Is that correct?
>Op 21 aug. 2015 22:50 schreef "Joshua N Pritikin"
><[1]jpriti...@pobox.com>:
> Many CRAN packages offer improved performance when compiled with
> OpenMP. However, the MacOS and Windows binaries built by CRAN are
&g
Many CRAN packages offer improved performance when compiled with
OpenMP. However, the MacOS and Windows binaries built by CRAN are built
without openmp enabled. Would it be possible to build openmp enabled
binaries for some CRAN packages?
--
Joshua N. Pritikin
Department of Psychology
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