Hi all,
I am developing a package for the interpretation of mass spectrometry data, which can be found here: https://github.com/goat-anti-rabbit/labelpepmatch.R I wrote a vignette that compiles fine into a .html using knitr in Rstudio. The output line in the vignette.rmd file looks like : ??output: rmarkdown::html_vignette However, when I use devtools::install_github("goat-anti-rabbit/labelpepmatch.R") or devtools::install_github("goat-anti-rabbit/labelpepmatch.R",build_vignettes = TRUE), the package loads normally, but no vignette is found when using browseVignettes("labelpepmatch") or vignette("labelpepmatch"). I don't really get this, because as far as I understood, shouldn't the package be able to build the vignette from scratch? I also tried with these lines for output: output: html_document: theme: readable pdf_document: highlight: default toc: yes And it nicely knits into example html and pdf files, but no real files are created in the labelpepmatch/vignettes directory. Any suggestions here? So: recap of my questions: 1. Should it be possible for the vignette to be built from scratch and if yes, what is missing in my package for this functionality to work? 2. How can I make knitr output a html AND pdf in my vignettes directory? Looking forward to your replies. Many, many thanks! Rik [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
