I decided to grab a copy of that PDF from the RStudio CRAN mirror, and
downloaded on Linux (where hopefully it won't be an issue) from the list of
vignettes.
Virus Total gives it the same hash as the above linked PDF, so it's
definitely been propagated from CRAN, and *may* be malicious.
That is
Kevin,
This vignette from ggplot2 itself gives the "officially recommended" ways
to avoid the warnings from R CMD check
https://ggplot2.tidyverse.org/articles/ggplot2-in-packages.html
Cheers,
-Robert
On Thu, Apr 22, 2021 at 4:39 PM Paul SAVARY
wrote:
> Hi Kevin,
>
> I was faced to the same
Andrew,
I think if you want to include a Bioconductor dependency, then I think you
add the "biocViews:" line to your description file to enable bioconductor
package installation.
See this answer on Bioinformatics stackexchange:
https://bioinformatics.stackexchange.com/a/3375/51
Hope that helps!
Richel,
I think that feedback is important. Examples are examples first, and tests
second, as in if your examples no longer work, then maybe you need to check
your underlying code.
{testthat} tests belong in their own `tests` directory, and are used to
directly test your code and provide
Yohann,
Here is a description of the strategy I used a couple of years ago.
https://rmflight.github.io/post/licensing-r-packages-that-include-others-code/
-Robert
On Tue, Jul 7, 2020 at 1:52 PM Gábor Csárdi wrote:
> HI,
>
> here is an example from a package that was accepted relatively
Umm, but README.md becomes README.html on CRAN, and it is very nice to have.
I'm not sure what the error you are seeing is, but having README on CRAN is
nice.
Have you .Rbuildignore 'd README.Rmd?? That should be ignored if I remember
correctly.
-Robert
On Sat, Mar 7, 2020, 5:55 PM Jeff
Are you wanting to provide the DOI for citation purposes? Then I would
recommend making sure you have a valid citation file
https://r-pkgs.org/inst.html#inst-citation (which should be fine having a
DOI field), and add it to the README as well.
-Robert
Robert M Flight, PhD
Bioinformatics Research
Of course, if you do truly decide to *copy* a function from another
package, make sure everything is licensed appropriately and the authors
given attribution!
-Robert
On Wed, Sep 12, 2018, 8:09 AM Robert M. Flight wrote:
> Regarding still wanting to copy functions situation, I did this for
Regarding still wanting to copy functions situation, I did this for my
knitrProgressBar PKG, as it makes the progress R6 object from dplyr a first
class citizen of the PKG, and dplyr has a lot of dependencies that I didn't
want to force just to use their pre-existing progress bar.
Robert
On Wed,
ance would be very much appreciated.
Thanks,
-Robert
Robert M Flight, PhD
Bioinformatics Research Associate
Puller of Rabbits from Hats
Research Parasite
Resource Center for Stable Isotope Resolved Metabolomics
Manager, Systems Biology and Omics Integration Journal Club
Markey Cancer Center
C
single case to make sure that particular
function works.
These might be helpful:
https://www.mango-solutions.com/blog/testing-without-the-internet-using-mock-functions
Also, look at the use of this functionality in devtools:
https://github.com/hadley/devtools/search?utf8=%E2%9C%93=with_mock=
Hope th
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