Re: [R-sig-eco] Spatial ANCOVA in R

2008-11-16 Thread Carsten Dormann
Dear Camilo, I hope I interpret correctly what you want. In AN(C)OVA you are primary interested to see, whether a variable significantly contributes to the explanation of the observed variance, right? Spatial models by and large try to "do away with" spatial autocorrelation (SAC), so that coef

Re: [R-sig-eco] GAM with a Gamma error structure

2008-11-16 Thread Gavin Simpson
On Sun, 2008-11-16 at 17:58 -0500, Sally Roman wrote: > Hi- I'm try to run a GAM with a Gamma distribution, but am getting an > error message that there are non positive values allowed for the gamma > family. I do not have any negative values for my response or explanatory > variables. > > cod.fa

[R-sig-eco] GAM with a Gamma error structure

2008-11-16 Thread Sally Roman
Hi- I'm try to run a GAM with a Gamma distribution, but am getting an error message that there are non positive values allowed for the gamma family. I do not have any negative values for my response or explanatory variables. cod.fall.gam2.kept<-gam(y~s(b,bs="cr",k=4)+s(e,bs="cr",k=4)+f+s(g,bs="cr

Re: [R-sig-eco] residual with protest in vegan

2008-11-16 Thread tyler
Christopher Chizinski <[EMAIL PROTECTED]> writes: > I am using protest (in vegan) to assess the concordance between NMDS scores, > as shown below: > > fishbug.fit <- protest(scores.bug, scores.fish,permutations = ) > > I would like to get the average residuals from protest. When I use > res

[R-sig-eco] residual with protest in vegan

2008-11-16 Thread Christopher Chizinski
I am using protest (in vegan) to assess the concordance between NMDS scores, as shown below: fishbug.fit <- protest(scores.bug, scores.fish,permutations = ) I would like to get the average residuals from protest. When I use residuals(), resids.fit<-residuals(fishbug.fit) which residual