[R-sig-eco] Paternity data analysis problem

2013-07-24 Thread Moshiur Rahman
Hi R-helps, I did an experiment with FAs ['High' and 'Zero'(no w-3) quality; n=24 for each group]. Then I did AI to see their sperm competitiveness based on their paternity performance. My data is as below where Fish ID- Blind ID for each fish; Group ID- Dietary group ID; Diet quality - High=1, ze

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Gavin Simpson
Charles, You are way off base here. The list is not hear to promote the violating of copyright. Your email *is* incredibly disrespectful. Are you paying Francois to teach you? No! So what the hell does his profession have to do with your or anyone's right to rip off his hard work? I suspect Fran

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Jari Oksanen
In some cases lousy email system mandates promoting piracy: i replys, the previous messages are treated as appendices that cannot be edited. This also means that you must top-post. Kudos goes to MicroSoft + Nokia. Cheers, Jari Oksanen alkuperäinen viesti Lähettäjä: THIOULOUSE JEAN Lähe

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread THIOULOUSE JEAN
Hi François, Note that Jari and yourself also encourage piracy in the same way ;) Jean Le 24 juil. 2013 à 15:16, François Gillet a écrit : > Valerie and Sarah, > > Thank you for encouraging piracy by posting the URL of an illegal PDF of > our book :-( > > By the way, just look at ?vegemite

Re: [R-sig-eco] Copyright Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Sarah Goslee
This list is not an appropriate forum for a discussion of the ethics of copyright in science. Please refrain from posting such material to the r-sig-ecology list. This particular instance has been addressed by the list owners, and should be considered closed. If you have concerns, please feel fr

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Charles Novaes de Santana
Dear François, Sorry if this message seems to be disrespectful. But it would be unfair if I let you do what you are doing to these two researchers without saying anything. Did you really need to send an email to Springer "ethics.reporting"? And did you really need to answer their question so lord

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Sarah Goslee
I am very sorry, François - I did not follow the link that was included in my reply, and did not realize it was an illegal copy. As an author myself, I'm very aware of intellectual property and piracy issues, and would never knowingly do such a thing. (Though I note that you just sent it to the lis

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread François Gillet
Valerie and Sarah, Thank you for encouraging piracy by posting the URL of an illegal PDF of our book :-( By the way, just look at ?vegemite and you'll find easily the solution to your problem: with the argument scale="log" your numeric data will be converted to 1-char symbols. François

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Jari Oksanen
Vegemite is vegemite because it is so condensed. It is condensed because it uses only one column for data and no separators between columns. If you want to print your full data, just do so. You do not need any fancy functions for the purpose. If you want to reorder your data, learn how to use ro

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Basil Iannone
Valarie, I too ran across this problem. vegmite operates on data with a single digit such as Braun-Blanquet cover estimates. Thus vegemite command will not work on data such as environmental data or biomass data unless you convert it to a single digit, causing you to loose a lot of information. So

[R-sig-eco] Paternity data analysis problem

2013-07-24 Thread Moshiur Rahman
Hi R-helps, I did an experiment with FAs ['High' and 'Zero'(no w-3) quality; n=24 for each group]. Then I did AI to see their sperm competitiveness based on their paternity performance. My data is as below where Fish ID- Blind ID for each fish; Group ID- Dietary group ID; Diet quality - High=1, ze

Re: [R-sig-eco] Heat Map for species - code from Numerical Ecology with R

2013-07-24 Thread Sarah Goslee
Hi Valerie, Did the suggestions given on the R-help list fail to work? You do need to provide you abundance data as one character, as specified in ?vegemite which also gives suggestions for conversion. Sarah On Tuesday, July 23, 2013, Valerie Mucciarelli wrote: > Hello, > > I am relatively new

Re: [R-sig-eco] create point grid within polygon

2013-07-24 Thread Mauricio Zambrano-Bigiarini
On 07/23/2013 07:29 PM, David García Callejas wrote: Hi all, is it possible to create an object of class SpatialPoint/SpatialPointDataFrame, with a given resolution, constrained to a certain SpatialPolygon? Hi David, Have a look to: ?sp::spsample - START example library(sp)