[R-sig-eco] Problems with vegdist in Vegan

2008-11-27 Thread Manuel Spínola
Dear list members, I am runnig a NMDS in Vegan (version 1.13.2, Windows) and I get the following message with the function vegdist: > aves.dis <- vegdist(avesp.esp, dist="jaccard") Warning messages: 1: In vegdist(avesp.esp, dist = "jaccard") : you have empty rows: their dissimilarities may be

Re: [R-sig-eco] Problems with vegdist in Vegan

2008-11-27 Thread tyler
Manuel Spínola <[EMAIL PROTECTED]> writes: > I am runnig a NMDS in Vegan (version 1.13.2, Windows) and I get the > following message with the function vegdist: > >> aves.dis <- vegdist(avesp.esp, dist="jaccard") > Warning messages: > 1: In vegdist(avesp.esp, dist = "jaccard") : > you have empty r

Re: [R-sig-eco] Problems with vegdist in Vegan

2008-12-01 Thread Gavin Simpson
I don't understand your data? Dissimilarities are computed with vegdist() in vegan on an n x m matrix of n samples and m variables. The m variables could be species or any other set of descriptor variables. Is your data like this? Or did you mean that your data are n samples with a single column o

Re: [R-sig-eco] Problems with vegdist in Vegan

2008-12-01 Thread Gavin Simpson
On Mon, 2008-12-01 at 19:30 +, Gavin Simpson wrote: > I don't understand your data? Dissimilarities are computed with > vegdist() in vegan on an n x m matrix of n samples and m variables. The > m variables could be species or any other set of descriptor variables. > > Is your data like this? O