Re: [R-sig-Fedora] No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6.9 (Carbon)

2017-08-23 Thread Tom Callaway
No, not R's configure, PCRE's configure. The PCRE library that you've built is missing some functionality. ~tom On Aug 23, 2017 7:53 PM, "Jaime Alvarez Benayas" < jalvarezbenay...@sheffield.ac.uk> wrote: > Hello, > > Thanks again. I have checked the configure step, the only messages I get >

Re: [R-sig-Fedora] No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6.9 (Carbon)

2017-08-23 Thread Jaime Alvarez Benayas
Hello, Thanks again. I have checked the configure step, the only messages I get containing pcre are: checking for pcre_fullinfo in -lpcre... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking pcre/pcre.h

Re: [R-sig-Fedora] No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6.9 (Carbon)

2017-08-23 Thread Tom Callaway
On 08/23/2017 03:58 PM, Jaime Alvarez Benayas wrote: > ../../lib/libR.so: undefined reference to `pcre_assign_jit_stack' > ../../lib/libR.so: undefined reference to `pcre_jit_stack_alloc' > ../../lib/libR.so: undefined reference to `pcre_free_study' This is the error. Your PCRE is being built

Re: [R-sig-Fedora] No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6.9 (Carbon)

2017-08-23 Thread Tom Callaway
On 08/18/2017 01:12 PM, Jaime Alvarez Benayas wrote: > Hello, > > I am trying to build R from source on Scientific Linux release 6.9 > (Carbon), Linux version 2.6.32-696.3.2.el6.x86_64 (Red Hat 4.4.7-18). Okay, so the versions of zlib, bzip2, xz, curl, and pcre are too old on Scientific Linux

Re: [R-sig-Fedora] No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6.9 (Carbon)

2017-08-23 Thread Jaime Alvarez Benayas
Hello, I am installing R in an environment where I am not admin... Thanks -Original Message- From: Tom Callaway [mailto:tcall...@redhat.com] Sent: miércoles, 23 de agosto de 2017 19:42 To: Jaime Alvarez Benayas ; r-sig-fedora@r-project.org Subject:

Re: [R-sig-Fedora] No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6.9 (Carbon)

2017-08-23 Thread Tom Callaway
On 08/18/2017 01:12 PM, Jaime Alvarez Benayas wrote: > Hello, > > I am trying to build R from source on Scientific Linux release 6.9 > (Carbon), Linux version 2.6.32-696.3.2.el6.x86_64 (Red Hat 4.4.7-18). Before debugging this too far, is there a reason you're building from source as opposed

Re: [R-sig-Fedora] Error "translateCharUTF8' must be called on a CHARSXP Execution halted"

2017-08-23 Thread Martyn Plummer
It is difficult to debug this without a reproducible example. Do you have, in the file system that you are trying to list, files with names that are not utf8-encoded? Martyn On Wed, 2017-08-23 at 13:12 +0200, Johannes Lips wrote: > On 23.08.2017 12:02, Braun, Stefan wrote: > > Dear list, > >

Re: [R-sig-Fedora] Error "translateCharUTF8' must be called on a CHARSXP Execution halted"

2017-08-23 Thread Johannes Lips
On 23.08.2017 12:02, Braun, Stefan wrote: Dear list, I installed R 3.3.2 on a Red Hat Linux Enterprise 7.3 machine by adding the EPEL-repository and then installing it via yum. R starts up and seems to be doing fine at first sight. However, when I try to list the files in a directory with the

[R-sig-Fedora] Error "translateCharUTF8' must be called on a CHARSXP Execution halted"

2017-08-23 Thread Braun, Stefan
Dear list, I installed R 3.3.2 on a Red Hat Linux Enterprise 7.3 machine by adding the EPEL-repository and then installing it via yum. R starts up and seems to be doing fine at first sight. However, when I try to list the files in a directory with the command files <-