rgdal compiles fine on my Debian Testing (Buster) system by removing
an older pro_api.h file:
1. As suggested by Roger, I located and removed an older version of
proj_api.h taht had not been removed when I removed the older proj4
version:
$ sudo find / -name proj_api.h
On Fri, 15 Sep 2017, Agustin Lobo wrote:
I'm now very confused. It seems to me, in line with what you say, that
I had 2 different
kinds of problems:
- Those derived from upgrading from Debian Stretch to Buster (a
consequence of keeping the system as Debian testing: it is just the
consequence of
Forwarded to list, as Xavier is not subscribed.
Roger
On Thu, 14 Sep 2017, Xavier Prudent wrote:
Dear all,
I had to recreate the /etc/source.list
and could then install homebrew and hence gdal, hence rgdal,
that was quite a ride :) but it worked!
Thank you for your help!
Greetings,
I'm now very confused. It seems to me, in line with what you say, that
I had 2 different
kinds of problems:
- Those derived from upgrading from Debian Stretch to Buster (a
consequence of keeping the system as Debian testing: it is just the
consequence of testing passing from Stretch to Buster as
As Edzer said earlier in this thread (and Agus was quite right to post
rather than contact me directly), reproducing the problem(s) is hard
without access to the specific platform (thread started here):
https://stat.ethz.ch/pipermail/r-sig-geo/2017-September/025974.html
My guesses so far are
On Wed, 13 Sep 2017, Agustin Lobo wrote:
The problem seems to be related to the compiler. I had:
gcc version 5.3.1 20160101 (Debian 5.3.1-5)
I have now:
gcc version 7.2.0 (Debian 7.2.0-4)
All weird previus errors are gone but I still have:
configure: PROJ.4 version: 4.8.0
./configure: line
The problem seems to be related to the compiler. I had:
gcc version 5.3.1 20160101 (Debian 5.3.1-5)
I have now:
gcc version 7.2.0 (Debian 7.2.0-4)
All weird previus errors are gone but I still have:
configure: PROJ.4 version: 4.8.0
./configure: line 3725: 8390 Segmentation fault
g++ compiler than R itself, so you may need to install
GDAL
and R
from source. There have been unclear reports of issues with
-std=.
Hope this helps,
Roger
Roger Bivand
Norwegian School of Economics
Bergen, Norway
Fra: Agustin Lobo
Sendt: fredag 8. september, 14.49
Emne: [R-sig-Geo]
t;>>>>>>> How did you install gdal and proj on that machine?
>>>>>>>>>
>>>>>>>>> On 12/09/17 09:10, Agustin Lobo wrote:
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
&
th -std=.
Hope this helps,
Roger
Roger Bivand
Norwegian School of Economics
Bergen, Norway
Fra: Agustin Lobo
Sendt: fredag 8. september, 14.49
Emne: [R-sig-Geo] Errors at installing rgdal on Debian Buster
Til: r-sig-geo
I get lots of errors at installing rgdal on a recently upgraded
machine
gt;>> ./configure: line 3725: 8390 Segmentation fault
>>>>>>>> ./proj_conf_test
>>>>>>>> checking PROJ.4: epsg found and readable... yes
>>>>>>>> ./configure: line 3800: 8399 Segmentation fault
>>>>>>&
he root cause. Almost certainly the installed GDAL ha different
assumptions
about the g++ compiler than R itself, so you may need to install GDAL
and R
from source. There have been unclear reports of issues with -std=.
Hope this helps,
Roger
Roger Bivand
Norwegian School of Economics
Bergen, Norway
Fra
fpic -g
>>>>>> -O2 -fdebug-prefix-map=/build/r-base-yDv1ct/r-base-3.3.3=.
>>>>>> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
>>>>>> -D_FORTIFY_SOURCE=2 -g -c OGR_write.cpp -o OGR_write.o
>>>>>> In f
from source. There have been unclear reports of issues with -std=.
Hope this helps,
Roger
Roger Bivand
Norwegian School of Economics
Bergen, Norway
Fra: Agustin Lobo
Sendt: fredag 8. september, 14.49
Emne: [R-sig-Geo] Errors at installing rgdal on Debian Buster
Til: r-sig-geo
I get lots of er
Norwegian School of Economics
Bergen, Norway
Fra: Agustin Lobo
Sendt: fredag 8. september, 14.49
Emne: [R-sig-Geo] Errors at installing rgdal on Debian Buster
Til: r-sig-geo
I get lots of errors at installing rgdal on a recently upgraded machine to Debian Buster
and R3.3.3 There are so many e
about
>>> the g++ compiler than R itself, so you may need to install GDAL and R from
>>> source. There have been unclear reports of issues with -std=.
>>>
>>> Hope this helps,
>>>
>>> Roger
>>>
>>> Roger Bivand
>>> No
f issues with -std=.
>>
>> Hope this helps,
>>
>> Roger
>>
>> Roger Bivand
>> Norwegian School of Economics
>> Bergen, Norway
>>
>>
>>
>> Fra: Agustin Lobo
>> Sendt: fredag 8. september, 14.49
>> Emne: [R-sig-Geo] Err
es with -std=.
>
> Hope this helps,
>
> Roger
>
> Roger Bivand
> Norwegian School of Economics
> Bergen, Norway
>
>
>
> Fra: Agustin Lobo
> Sendt: fredag 8. september, 14.49
> Emne: [R-sig-Geo] Errors at installing rgdal on Debian Buster
> Til: r-sig-geo
R from source.
There have been unclear reports of issues with -std=.
Hope this helps,
Roger
Roger Bivand
Norwegian School of Economics
Bergen, Norway
Fra: Agustin Lobo
Sendt: fredag 8. september, 14.49
Emne: [R-sig-Geo] Errors at installing rgdal on Debian Buster
Til: r-sig-geo
I get lots of
I get lots of errors at installing rgdal on a recently upgraded machine to
Debian Buster and R3.3.3
There are so many errors that I cannot scroll up enough as to get where
the errors actually start and report.
Is there any way to save the output of install.packages("rgdal") ?
Any other reports on
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