Re: [R-sig-phylo] PICs: Why force linear regressions through the origin?

2009-05-08 Thread Joe Felsenstein
Gernot Huber asked -- 1. Why do you have to force a linear regression through the origin when using phylogenetically independent contrasts (PICs)? Because their expectations are zero. A contrast could be either X1 - X2 or X2 - X1, for one thing. The expectations of X1 and X2 are identical

Re: [R-sig-phylo] PICs: Why force linear regressions through the origin?

2009-05-08 Thread tgarland
This is also covered in the following paper (and others): Garland, T., Jr., P. H. Harvey, and A. R. Ives. 1992. Procedures for the analysis of comparative data using phylogenetically independent contrasts. Systematic Biology 41:18-32. Available here: