Emmanuel wrote:
Is it a problem with ties or with identical sequences? I guess you can
solve the latter easily (eg, using the haplotype function in
pegas), and
this will solve the vast majority of ties. Other cases of ties will
certainly not result in such high bootstrap values (that's my
Hi Alastair,
Alastair Potts wrote on 08/05/2011 00:07:
Hi Emmanuel (Klaus and Joe),
The example data was meant to demonstrate that the tie-breaking in nj is
affecting the bootstrap results - or rather the lack of any way to deal
with tie breaking.
I've noticed that a bunch of identical sequen
