Hi Klaus
Thanks for your help. One final query (hopefully): Is there a way to export
this plot
plotBSNew(treeRatchet, trees)
as a newick formatted file (ie with branch length and support)?
Regards,
Brian.
> Date: Wed, 4 Apr 2012 14:57:40 +0200
> Subject: Re: [R-sig-phylo] parsimony bootstra
Hi all,
Does anyone know if there is a phylogenetic package that will run a test
for multivariate phylogenetic signal (phytools possibly??). I'm trying to
find a way to use methods by Zheng, L, AR Ives, T Garland, BR Larget, Y Yu,
K Cao 2009 New multivariate tests for phylogenetic signal and trai
Dear all,
Hi. My name is Masahito. I am running ANCOVA type model (continuous response
variable against mix of continuous and categorical independent variables) using
pglmEstLambda function in CAIC package, and wonder if I can show anova table
based on type 2 or 3 sum of square, which are not d
Hello Brian,
it is quite easy:
trees = bootstrap.phyDat(primates, pratchet, trace = 0)
plotBSNew(treeRatchet, trees)
You can use the same parameters as for pratchet and there is some
support for parallel code if you run it on a terminal (on Linux or
Mac).
Unfortunately there is was a bug introdu
