[R-sig-phylo] Error with names in pmc funtion, {pmc}

Hello everyone, I am exploring Carl Boettiger's package pmc. The problem is that I get following error message with simulated and geospiza dataset: Error in treedata(tree, data) : names for 'data' must be supplied Simulation: tree-rtree(10) #simulate tree tree-chronopl(tree,lambda=0.1) # make

Re: [R-sig-phylo] pruning tree of 10000 species

Hello, Thanks to both Jose and Liam. Let me explain more about my question. 1. The file is from Jetz et al. (2012) bird phylogeny. (Jose got a right guess) The file is composed of a backbone tree and 9 other trees. The file format is .tre and each file is about 453,000 kb. The

Re: [R-sig-phylo] pruning tree of 10000 species

On Fri, Apr 12, 2013 at 7:03 AM, Elaine Kuo elaine.kuo...@gmail.com wrote: Hello, Thanks to both Jose and Liam. Let me explain more about my question. 1. The file is from Jetz et al. (2012) bird phylogeny. (Jose got a right guess) The file is composed of a backbone tree and 9 other