Re: [R-sig-phylo] PGLS vs lm

2013-07-14 Thread Emmanuel Paradis
Hi all, I would like to react a bit on this issue. Probably one problem is that the distinction correlation vs. regression is not the same for independent data and for phylogenetic data. Consider the case of independent observations first. Suppose we are interested in the relationship y = b

Re: [R-sig-phylo] PGLS vs lm

2013-07-14 Thread Theodore Garland Jr
Maybe what we need here is an approach based on  simultaneous equations (aka structural equation models), but I'm not  aware whether this exists in a phylogenetic framework. Exactly! And it will need to incorporate measurement error in all variables as well as, eventually, uncertainly in the