Hi there,
you can check our new package treescape (still unpublished) to do exactly that,
and more.
https://github.com/thibautjombart/treescape
Cheers
Thibaut
==
Dr Thibaut Jombart
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epide
Is there a way to plot gene tree similarities in 3D ordinal space? I want
to identify groups and outliers for hundreds of gene trees. I am pretty
happy with TreeCmp (java program and graphing distances in ggplot) but I'd
be keen to see this in a more multi-dimensional format.
Cheers
Chris Budden
Hi Saurabh,
I have some R code to fit BM with two reflective bounds (not absorbing
ones). I don't know how this compares to what Brian suggested.
The paper describing the model is in review, but the code has been tested
and inference has reasonable performance. The model can be compared to
other u
There's alpha code to do this in TreEvo, but we're still readying this for
publication (and it's now supported by an NSF grant, so expect much more
development), and so I wouldn't advise using it yet. I don't know of
anything else at the moment.
Best,
Brian
__
Hello,
does anyone know if its possible and how to fit Brownian evolution with
either reflecting or absorbing boundaries?
And many thanks for creating this excellent resource!
Saurabh
--
Saurabh Mahajan
Research Scholar/Graduate Student
Deepa Agashe's Lab
National Center for Biological Scienc
