[R-sig-phylo] Trying to read a tree with numerical node labels, but without edge length

2014-08-29 Thread Daniel Rafael Miranda-Esquivel
Dear all, I tried to read a tree like this: #NEXUS begin trees ; tree tagged_tree = [&U] (A,(B,(C,D)60)100); end ; using read.nexus; while figtree reads it, ape refuses, telling that there is an error: Error in start:end : NA/NaN argument I tried readNexus in phylobase, but there is a problem

[R-sig-phylo] A problem with majority rule consensus

2011-10-20 Thread Daniel Rafael Miranda-Esquivel
ead and written back to a file with no problem, but the consensus freezes and returns nothing, Is it a way to solve this? All the best, Daniel -- Daniel Rafael Miranda-Esquivel Laboratorio de Sistemática y Biogeografía Colecc. Entomología Univ. Industrial de Santander A.A. 678 Bucarama

[R-sig-phylo] Collapsing nodes using node.labels

2011-09-27 Thread Daniel Rafael Miranda-Esquivel
Hello all, I am trying to collapse some nodes in a tree but using node.label and not edge.length, is there a way to convert node.label to edge.length? or a function to collapse a node but using node.label directly? Daniel ___ R-sig-phylo mailing l