to do that in a single function?
Thank you very much in advance,
Diogo
--
Diogo B. Provete, PhD
Assistant Professor
Biodiversity Synthesis lab <http://diogoprovete.weebly.com/>
Biosciences Institute | Federal University of Mato Grosso do Sul | Brazil
Associate Editor: Ecology and
Hi Susana,
yes, the function picante::evol.distinct calculates the ES metric used in
Jetz's et al DR metric
https://www.rdocumentation.org/packages/picante/versions/1.8.1/topics/evol.distinct
Best,
Diogo
Em sáb., 30 de mai. de 2020 às 06:02,
escreveu:
> Send R-sig-phylo mailing list submission
Hi Everyone,
I'm trying to obtain the 95% CI for the loadings of a phylogenetic pca in
order to improve the interpretation of axes.
I'm trying to implement this in boot package by modifying this code that
uses prcomp:
https://stackoverflow.com/questions/31044922/confidence-intervals-of-loadings-in
As far as I know, only the package bayou has a function to estimate
ancestral states using OU. Rphylopars also does it using OU with missing
data.
Best,
Diogo
--
Diogo B. Provete
Assistant Professor
Institute of Biosciences
Federal University of Mato Grosso do Sul
Campo Grande, Mato Grosso do
stance ~ type_arena * type_og_stimulus, random =
~Specie + :
prior$G has the wrong number of structures
Thank you in advance,
Diogo
--
*Diogo B. Provete, PhD.*
FAPESP Post-doctoral fellow
Department of Environmental Sciences
Centre for Sciences and Technologies for Sustainability
Federal Univer
Dear list,
I was wondering if I could adjust a generalized least square model to part
of my phylogeny, similarly to it's done in quantile regression, ie., select
a few clades in a phylogeny and adjust a pgls to it. I want with this
explore non-stationarity of the relationship between two traits alo
Dear List,
taking advantage of the discussion, I'd like to ask if I could do these
test of rate heterogeneity in brownie.lite or auteur with a polytomous
tree. Apparantly, auteur only accepts a fully dichotomous tree. Is there
any alternative?
Thank you in advance,
Diogo
--
Atenciosamente,
*Diog
Dear List,
I was trying to implement a phylogenetic correlogram with Moran's I in R.
Unfortunately all functions to implement correlograms in packages for
spatial statistics require Lat/Long coordinates. In an old version of ape
there was this function correlogram.phylo that worked with a copheneti
I have a doubt with using the picante::phylosor.rnd for testing hypothesis
about the phylogenetic dissimilarities between sites. This function gives
the randomized matrices obtained with the null model chosen. But how can I
do to explicitly test for a significant difference between the observed
phy
Dear List,
I have 2 data sets: one phylogenetic distance matrix, composed of 28 species
of anuran amphibians, and a trait matrix composed of species by categories
of visceral pigmentation on the surface of 20 organs [categories may vary
from 0 (total absence of pigmentation) to 3 (surface of a give
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