Re: [R-sig-phylo] coordinates for phylo tips

ve HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Gwennaël BATAILLE, PhD student - Teac

[R-sig-phylo] Force a topology - Cophyloplot {ape}

ments", but do not know how... (PS : I am using phylograms). Thank you very much for any help ! Gwennaël -- Gwennaël BATAILLE, PhD student - Teaching assistant Earth and Life Institute Université Catholique de Louvain SST/ELI/ELIB Bâtiment Carnoy, c.145 Croix du sud 4-5, bte L7.07.04 1348

Re: [R-sig-phylo] Plot size

or of Biology University of Massachusetts Boston web: http://faculty.umb.edu/liam.revell/ email: liam.rev...@umb.edu blog: http://phytools.blogspot.com On 8/28/2012 1:34 PM, Gwennaël Bataille wrote: Dear R-sig-phylo users, I would like to rescale a large tree, but I am not an expert of graphs in

[R-sig-phylo] Plot size

Dear R-sig-phylo users, I would like to rescale a large tree, but I am not an expert of graphs in R... My labels overlap with each other. And I would like to find an option to put more space between each branch, but could not find one. So I tried to resize the labels (playing with cex paramete

[R-sig-phylo] Mapping Trait Value+ Combining DNA/Trait + Coevolution

ape for "Test of host-parasite coevolution" ; do something similar exist in R to test for specific hypotheses (i.e. "association by descent", "host switching", and so on) ? Thanks a lot in advance. Best regards, Gwennaël Bataille -> gwennael.batai...@uclou

[R-sig-phylo] Zero bootstrap values

gagsttctcgaacagacctcaatcgaaacgcc-gatctgcgacgctatagcttstgggtactttcaaggacccgtcttga _____ -- Gwennaël BATAILLE, PhD student - Teaching assistant Earth and Life Institute Université Catholique de Louvain SST/ELI/E

[R-sig-phylo] Boostrap and likelihood values on branches

answer is no, and parsimony scores are only there to compare them, not to deduce what is a "good" or "bad" score… alnx2pars <- parsimony(rtrx, as.phyDat(alnx2)) alnx2parsoptim <

[R-sig-phylo] Error message using clustal{ape} under Windows

ix(clustal) ## change outf <- paste(d, "input_clustal.aln", sep = "/") -> sep = "\\" But always get the same error message… Thank you very much in advance for your help. Regards, Gwennaël Bataille ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo