descending from it. You can then use them to match nodes and edges of
different trees.
Best,
Emmanuel
-Original Message-
From: Jingchun Li jingc...@umich.edu
Sender: r-sig-phylo-boun...@r-project.org
Date: Mon, 11 Nov 2013 19:06:08
To: Liam J. Revellliam.rev...@umb.edu
Cc: r-sig-phylo@r
Dear all,
I am trying to make a tree figure and I can not figure out the right way to
do it.
I have two trees, A and B. They have the same set of taxa but are in
different orders. A is in the default order when read by read.tree(). B is
ladderized. For my purpose, I want to plot A and label
, Liam
Liam J. Revell, Assistant Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org
On 11/11/2013 5:00 PM, Jingchun Li wrote:
Dear all,
I am trying to make a tree figure and I can
Sorry, just realized the values I put there are the AIC values. But the
likelihood shows the same pattern, i.e., OU and EB models have the same
values.
Jingchun
On Thu, Oct 17, 2013 at 7:18 PM, Jingchun Li jingc...@umich.edu wrote:
Dear all,
I am trying to fit a series of trait evolution
to compute correctly df's.
Cheers,
Emmanuel
--
*From: * Jingchun Li jingc...@umich.edu
*Date: *Thu, 4 Apr 2013 22:25:09 -0400
*To: *emmanuel.para...@ird.fr; r-sig-phylo@r-project.org
*Subject: *Re: [R-sig-phylo] ML ancestral state reconstruction using
different
Hi all,
I am exploring different methods for ancestral state reconstruction for a
small phylogeny I have (26 OTUs). I have one binary trait coded as 0s and
1s for all the taxa. And I am more interested in the transition rates
between the two states.
If I understand correctly, a maximum
