Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package

2018-06-11 Thread Sebastian Y . Müller
gt; > On Jun 8, 2018 8:50 AM, "Sebastian Y. Müller" <mailto:sm...@cam.ac.uk>> wrote: > > Dear all, > > I'd was wondering how to best perform a test to determine test > disagreement (congruence test) in R? > Additional information can b

[R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package

2018-06-08 Thread Sebastian Y . Müller
Dear all, I'd was wondering how to best perform a test to determine test disagreement (congruence test) in R? Additional information can be found in Planet et al (DOI: 10.1016/j.jbi.2005.08.008). A common test seems the Shimodaira-Hasegawa Test (SH-test) which used to be implemented in APE: