Thank you very much Liam,
You are always so helpful.
I tried you code and get this warning:
Warning message:
In bind.tree(tree, tip, where = where, position = pp) :
one tree has no branch lengths, they have been ignored
After adding edge.length=
Hi Eliot & Juan.
There is also now an interactive mode for bind.tip. This allows you to
click on a plotted tree & bind a tip to that spot. It otherwise works
the same as the prior CRAN version of bind.tip. To get this
functionality, you need to pull down the latest version of phytools from
Hello
I need to add branches to a tree at different, predefined tips. For
instance:
th <- rtree(10)
I have an object HP_sim$nameH with the taxa names:
> HP_sim$nameH
[1] "H1" "H2" "H3" "H4" "H5" "H6" "H7" "H8" "H9" "H10"
then
Hola Juan.
position is distance below the specified node (or tip) so it has to be
less than the the length of the edge to which the tip is being added or
else you will get an error. You could modify as follows:
node<-which(tree$tip.label==tip.name)
tree<-bind.tip(tree,where=node,position=
What I'm about to describe is essentially an elaborate wrapper for Liam's
bind.tip, so he deserves the credit for figuring this all out. But if you
are interested, I have a small package on GitHub that will automate this
for you. It probably doesn't make much difference with so few taxa you need
