Hi Klaus,
I did exactly as Gwennaël did and got no value equal to 0. You are right
about the bug in prop.clades (and it's fixed now), but in the present
case, and I believe in general, this should have no incidence because
postprocess.prop.part() is called inside boot.phylo() before calling
p
Dear Gwennaël,
first it seems there was a bug in the function prop.clades from ape
introduced recently, results in many zeros of bootstrap values.
This function needs to be replaced in the ape package:
prop.clades <- function (phy, ..., part = NULL, rooted = FALSE)
{
if (is.null(part)) {
Dear all,
I used a very raw 18S phylogeny of Craniates to introduce phylogeny to
students, and I would like to estimate bootstrap or likelihood values
for branches. Sorry for this long message, but I hope you can answer at
least some of my questions.
1) For bootstrapping, I obtain "zero" valu
