Dear r-sig-phylo members,
Question 1 :
Would you know a way to force a topology in R when you are using a
construction method (like NJ, ML or max. parcimony), i.e. you are
already sure about some part of the architecture... ?
Question 2 :
While using the cophyloplot {ape} function, I get quite frustrated to
see the links between my species to overlap with each other, so that I
cannot distinguish anything in the end... Can this be fixed easily ?
I explored the script and saw that cophyloplot refers to the
plotCophylo2 function. I think I would have to modify lines using
"segments", but do not know how... (PS : I am using phylograms).
Thank you very much for any help !
Gwennaël
--
Gwennaël BATAILLE, PhD student - Teaching assistant
Earth and Life Institute
Université Catholique de Louvain
SST/ELI/ELIB
Bâtiment Carnoy, c.145
Croix du sud 4-5, bte L7.07.04
1348 Louvain-la-Neuve
BELGIUM
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