Re: [R-sig-phylo] PCoA with custom distance matrix

2013-06-10 Thread Vojtěch Zeisek
-project.org/ From: r-sig-phylo-boun...@r-project.org [r-sig-phylo-boun...@r-project.org] on behalf of Vojtěch Zeisek [vojtech.zei...@opensuse.org] Sent: 07 June 2013 15:46 To: mailinglist R Subject: [R-sig-phylo] PCoA with custom distance matrix Hello

Re: [R-sig-phylo] PCoA with custom distance matrix

2013-06-10 Thread Jombart, Thibaut
From: r-sig-phylo-boun...@r-project.org [r-sig-phylo-boun...@r-project.org] on behalf of Vojtěch Zeisek [vojtech.zei...@opensuse.org] Sent: 10 June 2013 14:59 To: r-sig-phylo@r-project.org Subject: Re: [R-sig-phylo] PCoA with custom distance matrix Hello, thank You very much for Your reply. I'm

Re: [R-sig-phylo] PCoA with custom distance matrix

2013-06-10 Thread Vojtěch Zeisek
June 2013 14:59 To: r-sig-phylo@r-project.org Subject: Re: [R-sig-phylo] PCoA with custom distance matrix Hello, thank You very much for Your reply. I'm sftill little confused. Dne Pá 7. června 2013 16:03:13 jste napsal(a): Hello there, you could have done the PCoA on Chord's

[R-sig-phylo] PCoA with custom distance matrix

2013-06-07 Thread Vojtěch Zeisek
Hello, I have microsatellite data and I would like to analyze them using PCoA in R. I would like to use following genetic distance: Goldstein's (1995) (dμ)2 and Nei's chord distance (1983). I calculated those distances in MSA (Dieringer and Schlötterer 2003), because I didn't find any

Re: [R-sig-phylo] PCoA with custom distance matrix

2013-06-07 Thread Jombart, Thibaut
] on behalf of Vojtěch Zeisek [vojtech.zei...@opensuse.org] Sent: 07 June 2013 15:46 To: mailinglist R Subject: [R-sig-phylo] PCoA with custom distance matrix Hello, I have microsatellite data and I would like to analyze them using PCoA in R. I would like to use following genetic distance: Goldstein's (1995