t; Today's Topics:
>
> 1. Re: Pairwise tree distance matrix (Ross Mounce)
>
>
> --
>
> Message: 1
> Date: Fri, 20 Sep 2013 11:25:47 +0100
> From: Ross Mounce
>
unce/extinct_extant_chapter (see the diagram for a
visual explanation)
It's not the fastest or most elegant implementation possible... but it works.
(Apologies if this last option is not relevant to your use-case)
Best,
Ross
-- Forwarded message --
From: Rob Lanfear
Date: Th
You may look into treedist in phangorn (but just does pairs of trees, I
believe) or dist.multiphylo in distory (polynomial time, but I don't think
it's RF distance), or dist.topo in ape (but again, pairwise and not RF).
There's also RMesquite (http://rmesquite.r-forge.r-project.org/) to have R
jus
Hi All,
I'm looking for a method to calculate a pairwise distance matrix of RF
distances between a set of trees.
Specifically, I know it's possible to do this in linear time (relative to
the number of taxa), using an algorithm proposed in 1985[1]. This algorithm
is implemented in various places (
