Hi Kamila & Klaus,
Another solution could be to use nodelabels(), eg:
plot(nrooted)
nodelabels(text = b$BP)
See the examples in ?nodelabels for some ways to format the labels.
Best,
Emmanuel
Le 31/08/2015 15:57, Klaus Schliep a écrit :
Dear Kamila,
plotBS checks if trees are rooted or not
Dear Kamila,
plotBS checks if trees are rooted or not and if not midpoint roots the tree
nrooted <- root(nj(dist),outgroup=x)
is.rooted(nrooted) # returns FALSE
however the ape function does not pick up that the tree is rooted.
Add the argument resolve.root=TRUE:
nrooted <- root(nj(dist),outgroup=
Hi all,
I have a (almost certainly trivial) question about plotting a rooted tree with
bootstrap values using ape and phangorn. I am using a simple script that looks
like this:
dist <- daisy(matrix,metric="gower")
nrooted <- root(nj(dist),outgroup=x)
plot(nrooted) ## this plots the tree with t
