Re: [R-sig-phylo] Rphylopars changing observed data values

2020-07-20 Thread Julien Clavel
-phylo de la part de Liam J. Revell Envoyé : lundi 20 juillet 2020 18:47 À : Nick Crouch ; r-sig-phylo@r-project.org Objet : Re: [R-sig-phylo] Rphylopars changing observed data values   Dear Nick. I don't know what's going on with Rphylopars, but phytools also has a multivariate phy

Re: [R-sig-phylo] Rphylopars changing observed data values

2020-07-20 Thread Liam J. Revell
Dear Nick. I don't know what's going on with Rphylopars, but phytools also has a multivariate phylogenetic imputation function, phylo.impute. It's described here on my blog: http://blog.phytools.org/2019/03/phylogenetic-imputation-with.html (although, of course you should use the phytools ver

[R-sig-phylo] Rphylopars changing observed data values

2020-07-20 Thread Nick Crouch
Hi all, I'm trying to use Rphylopars to impute some missing data, but am having some strange results with my empirical data. The phylopars should return a `data.frame` of the original data with the missing (NA) values calculated given the phylogenetic data and evolutionary model. However, my k