Re: [R-sig-phylo] apTreeshape and as.treeshape

2013-06-12 Thread Fabricia Nascimento
Hi, Sorry, but I don't know how to reply to these messages as a thread (I hope now it works)… I just would like to make sure that you receive a copy of my fast file and I would like to know whether you were able to reproduce my results using ape and treeshape. Thanks again! Fabricia.

[R-sig-phylo] apTreeshape and as.treeshape

2013-06-10 Thread Fabricia Nascimento
Hi, I am trying to use the collies.test and maxlik.betasplit tests in apTreeshape R package. I have a set of DNA sequence in fasta format. I am following the steps below. 1. I construct a NJ using the ape R package using the nj(dist.dna(dataset). 2. After I use the as.treeshape form the

Re: [R-sig-phylo] apTreeshape and as.treeshape

2013-06-10 Thread Blum michael
Dear Fabricia, I am the maintainer of the package. Can you send me the tree that is responsible for the warnings please. It might be because of unresolved nodes. Sincerely Michael Blum Le 10/06/13 17:53, Fabricia Nascimento a écrit : Hi, I am trying to use the collies.test and