thanks!
>> d
>>
>> PS. If I drop TIPS, I have the same message.
>>
>> ________________
>> David Costantini
>> Professor of Conservation Physiology
>> Muséum National d'Histoire Naturelle, CNRS
>> 7 r
)
Subject: Re: [R-sig-phylo] phylogenetic correction and MCMC model
Hi,
This error always turns out to be mispellings on the part of the user.
Perhaps you have trailing white space in them?
Cheers,
Jarrod
On 19/05/2021 09:09, David Costantini wrote:
> This email was sent to you by someone
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- Original Message -
From: "Jarrod Hadfield"
To: "David COSTANTINI"
Cc: "r-sig-phylo"
Sent: Monday, 17 May, 2021 21:34:34
Subject: Re: [R-sig-phylo] phylogenetic correction and MCMC model
Hi,
chr
-- Original Message -
From: "Jarrod Hadfield"
To: "David COSTANTINI"
Cc: "r-sig-phylo"
Sent: Monday, 17 May, 2021 21:34:34
Subject: Re: [R-sig-phylo] phylogenetic correction and MCMC model
Hi,
chronos adds a chronos class to the object, creating problems. Anything
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https://twitter.com/DavidZool
http://scholar.google.com/citations?user=nBSC4-EJ&hl=it
- Original Message -
From: "Jarrod Hadfield"
To: "David COSTANTINI"
Cc: "r-sig-phylo"
Sent: Monday, 17 May, 2021 21:49:31
Subject: Re: [R-sig-phylo]
___
David Costantini
Professor of Conservation Physiology
Muséum National d'Histoire Naturelle, CNRS
7 rue Cuvier
75005 Paris, France
Tel.: +33.(0)1.40.79.53.74
Associate Editor Functional Ecology
http://davidcostantini.wordpress.com/
https://twitter.com/DavidZool
http://scholar.google.com/citatio
s://twitter.com/DavidZool
http://scholar.google.com/citations?user=nBSC4-EJ&hl=it
- Original Message -
From: "Jarrod Hadfield"
To: "David COSTANTINI"
Cc: "r-sig-phylo"
Sent: Monday, 17 May, 2021 21:34:34
Subject: Re: [R-sig-phylo] phylogenetic corre
ysiology
Muséum National d'Histoire Naturelle, CNRS
7 rue Cuvier
75005 Paris, France
Tel.: +33.(0)1.40.79.53.74
Associate Editor Functional Ecology
http://davidcostantini.wordpress.com/
https://twitter.com/DavidZool
http://scholar.google.com/citations?user=nBSC4-EAAAAJ&hl=it
- Original Me
ology
http://davidcostantini.wordpress.com/
https://twitter.com/DavidZool
http://scholar.google.com/citations?user=nBSC4-EJ&hl=it
----- Original Message -
From: "Jarrod Hadfield"
To: "David COSTANTINI" , "r-sig-phylo"
Sent: Monday, 17 May, 2021 19:48:59
Hi David,
It looks like phylo_ultra might be a list? Is phylo_ultra[[1]] a tree?
Also, don't use nodes="TIPS"; this is just to demonstrate how poor the
algorithm is when you don't use the expanded inverse. I see people using
nodes="TIPS" a lot - where does this code come from?
Cheers,
Jarrod
Dear All
I am trying to apply a phylogenetic correction to an MCMC model, but I have
problems in making the inverse matrix. I can visualise the treeplot very well,
but when I use the script:
inv.phylo<-inverseA(phylo_ultra,nodes="TIPS",scale=TRUE)
R tells me that there is an error:
Error in
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