Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-20 Thread David Costantini
thanks! >> d >> >> PS. If I drop TIPS, I have the same message. >> >> ________________ >> David Costantini >> Professor of Conservation Physiology >> Muséum National d'Histoire Naturelle, CNRS >> 7 r

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-20 Thread David Costantini
) Subject: Re: [R-sig-phylo] phylogenetic correction and MCMC model Hi, This error always turns out to be mispellings on the part of the user. Perhaps you have trailing white space in them? Cheers, Jarrod On 19/05/2021 09:09, David Costantini wrote: > This email was sent to you by someone

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-20 Thread Jarrod Hadfield
/DavidZool http://scholar.google.com/citations?user=nBSC4-EJ&hl=it - Original Message - From: "Jarrod Hadfield" To: "David COSTANTINI" Cc: "r-sig-phylo" Sent: Monday, 17 May, 2021 21:34:34 Subject: Re: [R-sig-phylo] phylogenetic correction and MCMC model Hi, chr

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-19 Thread David Costantini
-- Original Message - From: "Jarrod Hadfield" To: "David COSTANTINI" Cc: "r-sig-phylo" Sent: Monday, 17 May, 2021 21:34:34 Subject: Re: [R-sig-phylo] phylogenetic correction and MCMC model Hi, chronos adds a chronos class to the object, creating problems. Anything

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-17 Thread David Costantini
http://davidcostantini.wordpress.com/ https://twitter.com/DavidZool http://scholar.google.com/citations?user=nBSC4-EJ&hl=it - Original Message - From: "Jarrod Hadfield" To: "David COSTANTINI" Cc: "r-sig-phylo" Sent: Monday, 17 May, 2021 21:49:31 Subject: Re: [R-sig-phylo]

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-17 Thread Jarrod Hadfield
___ David Costantini Professor of Conservation Physiology Muséum National d'Histoire Naturelle, CNRS 7 rue Cuvier 75005 Paris, France Tel.: +33.(0)1.40.79.53.74 Associate Editor Functional Ecology http://davidcostantini.wordpress.com/ https://twitter.com/DavidZool http://scholar.google.com/citatio

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-17 Thread David Costantini
s://twitter.com/DavidZool http://scholar.google.com/citations?user=nBSC4-EJ&hl=it - Original Message - From: "Jarrod Hadfield" To: "David COSTANTINI" Cc: "r-sig-phylo" Sent: Monday, 17 May, 2021 21:34:34 Subject: Re: [R-sig-phylo] phylogenetic corre

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-17 Thread Jarrod Hadfield
ysiology Muséum National d'Histoire Naturelle, CNRS 7 rue Cuvier 75005 Paris, France Tel.: +33.(0)1.40.79.53.74 Associate Editor Functional Ecology http://davidcostantini.wordpress.com/ https://twitter.com/DavidZool http://scholar.google.com/citations?user=nBSC4-EAAAAJ&hl=it - Original Me

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-17 Thread David Costantini
ology http://davidcostantini.wordpress.com/ https://twitter.com/DavidZool http://scholar.google.com/citations?user=nBSC4-EJ&hl=it ----- Original Message - From: "Jarrod Hadfield" To: "David COSTANTINI" , "r-sig-phylo" Sent: Monday, 17 May, 2021 19:48:59

Re: [R-sig-phylo] phylogenetic correction and MCMC model

2021-05-17 Thread Jarrod Hadfield
Hi David, It looks like phylo_ultra might be a list? Is phylo_ultra[[1]] a tree? Also, don't use nodes="TIPS"; this is just to demonstrate how poor the algorithm is when you don't use the expanded inverse. I see people using nodes="TIPS" a lot - where does this code come from? Cheers, Jarrod

[R-sig-phylo] phylogenetic correction and MCMC model

2021-05-17 Thread David Costantini
Dear All I am trying to apply a phylogenetic correction to an MCMC model, but I have problems in making the inverse matrix. I can visualise the treeplot very well, but when I use the script: inv.phylo<-inverseA(phylo_ultra,nodes="TIPS",scale=TRUE) R tells me that there is an error: Error in