On 29 January 2014 at 12:06, Dan Tenenbaum wrote:
| Yes, thanks. I took a look at https://github.com/kevinushey/RcppBiocChecks
and it looks like Bioconductor packages are in good shape. Thanks Kevin for
checking this, and Steffen for fixing mzR and Rdisop.
|
| That document does refer to sever
On 28 January 2014 at 22:10, Dan Tenenbaum wrote:
| Thanks. I was actually wondering something slightly different: for the ones
that need modification, will they still work with the current Rcpp after being
modified, or are the changes not backwards-compatible? I will investigate and I
guess I
-
| > Subject: Re: [Rcpp-devel] Rcpp and required steps before next
| > release
| > Date: Tue, 28 Jan 2014 19:18:40 -0500
| > From: Kasper Daniel Hansen
| > To: Dirk Eddelbuettel
| > CC: Steffen Neumann ,
| > "rcpp-devel@lists.r-forge.r-projec
Dirk, others,
For large-scale testing like this up against Bioc, you could also try to
get in contact with the Bioconductor build managers. The responsibility
changes over time, but I believe that right now it is Dan Tenenbaum,
danda...@dandante.com, cc'ed.
Best,
Kasper
On Tue, Jan 28, 2014 at
On 28 January 2014 at 17:24, Steffen Neumann wrote:
| It passes R CMD check with R version 3.0.2 (2013-09-25)
| and Rcpp_0.10.6.1
I didn't address that earlier: 0.10.6.1 is from r-forge, and is behind.
The real development version is 0.10.6.9 and is on GitHub at
https://github.com/Rc
Hi Steffen,
Thanks so much for the prompt response. Replying to both posts here.
On 28 January 2014 at 17:08, Steffen Neumann wrote:
| Hi Kevin and Dirk,
|
| thanks for your preparations to make the transition smooth.
|
| On Mon, 2014-01-27 at 19:35 -0600, Dirk Eddelbuettel wrote:
| [...]
|
Just don’t assume you can #include anything else than Rcpp.h and RcppCommon.h
(but this one only if you need to provide custom wrap and as).
Romain
Le 28 janv. 2014 à 17:24, Steffen Neumann a écrit :
> Hi,
>
> I just pushed mzR-1.9.4 to BioC-SVN, which only required a change
> of #include's
Hi,
I just pushed mzR-1.9.4 to BioC-SVN, which only required a change
of #include's in src/pwiz/utility/misc/sha1calc.cpp
"[...] because it tries to include Rcpp/iostream/Rostream.h,
which no longer exists
(consolidated into Rcpp/iostream/Rstreambuf.h) [...]"
=> Since when does Rstreambuf.h
Hi Kevin and Dirk,
thanks for your preparations to make the transition smooth.
On Mon, 2014-01-27 at 19:35 -0600, Dirk Eddelbuettel wrote:
[...]
> linking step, and src/Makevars will go away for most packages. [ Exceptions:
I pushed Rdisop 1.23.2 to BioC-SVN, removing Rcpp from Depends,
as it
All,
A new Rcpp release is ready. But we need to take a few step to get to it.
With considerable help from Kevin Ushey, I have spent the last two weeks
testing this release against all known [but 5] CRAN dependents (and Kevin did
the same for BioConductor), identifying and correcting a few last
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