Re: [Rdkit-devel] RDKit 2018.03.1 Build and Installation

2018-05-16 Thread Greg Landrum
Yeah, the dockerfile that I pointed you to installs the ubuntu version of boost. That is what ends up being used to build the RDKit. You have a copy of boost 1.67 installed; this is too new for the version of cmake you have (and has additional problems anyway); the system boost solves this problem.

Re: [Rdkit-devel] RDKit 2018.03.1 Build and Installation

2018-05-16 Thread alb greg
The system boost? You're talking about libboost? 2018-05-16 14:54 GMT+02:00 Greg Landrum : > cmake is finding boost v1.67, not the system boost. > > > On Wed, May 16, 2018 at 2:34 PM alb greg > wrote: > >> Ubuntu 16.04 >> >> *CmakeMessages :* >> >> -- The C compiler identification is GNU 5.4.0

Re: [Rdkit-devel] RDKit 2018.03.1 Build and Installation

2018-05-16 Thread Greg Landrum
cmake is finding boost v1.67, not the system boost. On Wed, May 16, 2018 at 2:34 PM alb greg wrote: > Ubuntu 16.04 > > *CmakeMessages :* > > -- The C compiler identification is GNU 5.4.0 > -- The CXX compiler identification is GNU 5.4.0 > -- Check for working C compiler: /usr/bin/cc > -- Check

Re: [Rdkit-devel] RDKit 2018.03.1 Build and Installation

2018-05-16 Thread Greg Landrum
On Wed, May 16, 2018 at 12:53 PM alb greg wrote: > I followed the instructions in this dockerfile but it failed with an error > 2 during "make -j3 .. install" command. > > In order to be able to help I need a bit more information than that. What was the error you encountered? What version of Ubun

Re: [Rdkit-devel] RDKit 2018.03.1 Build and Installation

2018-05-16 Thread alb greg
I followed the instructions in this dockerfile but it failed with an error 2 during "make -j3 .. install" command. 2018-05-07 4:47 GMT+02:00 Greg Landrum : > For what it's worth: > I put together a Dockerfile to demonstrate how to build the RDKit under > Ubuntu 16.04 here: > https://github.com

Re: [Rdkit-devel] RDKit 2018.03.1 Build and Installation

2018-05-16 Thread alb greg
Thanks for your help Andrew! My cmake is in version 3.5.1 2018-05-03 19:09 GMT+02:00 Andrew Dalke : > On May 3, 2018, at 18:44, alb greg wrote: > > I installed cmake, python-dev, libsqlite3-dev, NumPy and Boost as > required. > > > > I tried to specify options like boost and python directories