Re: [Rdkit-discuss] Chirality wedge disappears in PNG depiction

2023-07-26 Thread Jean-Marc Nuzillard
Hi David, thank you for your suggestion. Setting wedgeBonds=True does not change anything, probably because wedging is performed later by the call to Chem.ReapplyMolBlockWedging() Best, Jean-Marc Le 26/07/2023 à 22:28, David Cosgrove a écrit : Hi, I’m away from my computer at the moment, so

Re: [Rdkit-discuss] Chirality wedge disappears in PNG depiction

2023-07-26 Thread David Cosgrove
Hi, I’m away from my computer at the moment, so can’t try anything, but I wonder if it’s anything to do with the ‘wedgeBonds=False’ option you gave when preparing the drawing. Dave On Wed, 26 Jul 2023 at 20:45, Jean-Marc Nuzillard < jm.nuzill...@univ-reims.fr> wrote: > Dear all, > > I use the

[Rdkit-discuss] Chirality wedge disappears in PNG depiction

2023-07-26 Thread Jean-Marc Nuzillard
Dear all, I use the following code to produce PNG drawings. I use RDKit version 2023.03.1 . The SMILES chain describes a molecule with a single chiral center of defined configuration. from rdkit import Chem from rdkit.Chem import rdCoordGen from rdkit.Chem.Draw import rdMolDraw2D from PIL