Re: [Rdkit-discuss] Apparent problem with GetSubstructMatch?

2018-09-18 Thread MARIA BRANDL via Rdkit-discuss
Dear Ian, print(Chem.MolToMolBlock(ps[0][0]))   produces: RDKit 2D 6 5 0 0 0 0 0 0 0 0999 V2000 6.49520.75000. O 0 0 0 0 0 0 0 0 0 0 0 0 5.1962 -0.0. C 0 0 0 0 0 0 0 0 0 0 0 0 3.89710.75000. C 0 0

[Rdkit-discuss] Apparent problem with GetSubstructMatch?

2018-09-18 Thread Ian Tickle
Hi all, sorry I realise you're probably all busy down in Chemistry with the meeting to give a quick answer to a problem I'm having with GetSubstructMatch. Basically I need to get the mapping between the reactants and the products in the form of the atom indices in the product Smiles in the order o