Re: [Rdkit-discuss] Folding count vectors

2019-12-02 Thread Benjamin Datko
Hi Francois, I agree with your suggestion. I am also CCing Greg on this response. I have tried to look around on google for viewing the source code of the CreateDifferenceFingerprintForReaction method but the most relevant pages I can find describing what the code does are [here]( https://www.rdk

Re: [Rdkit-discuss] Folding count vectors

2019-11-20 Thread Francois Berenger
On 20/11/2019 02:00, Benjamin Datko wrote: Hello Francois, I am trying to replicate some of the functionality of CreateDifferenceFingerprintForReaction [Ref 1] for my own understanding on how the code works. The function CreateDifferenceFingerprintForReaction allows for three difference fingerpr

Re: [Rdkit-discuss] Folding count vectors

2019-11-19 Thread Benjamin Datko
Hello Francois, I am trying to replicate some of the functionality of CreateDifferenceFingerprintForReaction [Ref 1] for my own understanding on how the code works. The function CreateDifferenceFingerprintForReaction allows for three difference fingerprint representation of the molecules: AtomPair

Re: [Rdkit-discuss] Folding count vectors

2019-11-18 Thread Francois Berenger
On 19/11/2019 03:34, Benjamin Datko wrote: Hello all, I am curious on how to fold a count vector fingerprint. I understand when folding bit vectors the most common way is to split the vector in half, and apply a bitwise OR operation. I think this is how the function rdkit.DataStructs.FoldFingerp

[Rdkit-discuss] Folding count vectors

2019-11-18 Thread Benjamin Datko
Hello all, I am curious on how to fold a count vector fingerprint. I understand when folding bit vectors the most common way is to split the vector in half, and apply a bitwise OR operation. I think this is how the function rdkit.DataStructs.FoldFingerprint works in RDKit, correct me if I am wrong