Re: [Rdkit-discuss] Rdkit-discuss Digest, Vol 141, Issue 16

2019-07-22 Thread Greg Landrum
Hi Ansgar, It is possible to specify the tautomer parameter file that is used, but in order for me to explain how, I need to know how you are currently using the code to enumerate tautomers (i.e. which function you are calling). As for the format: it's tab-delimited and the first entry is the nam

Re: [Rdkit-discuss] Rdkit-discuss Digest, Vol 141, Issue 16

2019-07-22 Thread Schuffenhauer, Ansgar
Dear all For the standardizer module (Chem.MolStandardize), what is the best way to change some of the tautomerizer rules? There is a data file in share/RDKit/Data/Molstandardize/tautomerTransforms.in which I assume to define the default. // NameSMARTS Bonds Charges 1,3 (thio)keto/e