Author: bugman
Date: Mon Nov 26 00:00:14 2007
New Revision: 3987
URL: http://svn.gna.org/viewcvs/relax?rev=3987&view=rev
Log:
Merged revisions 3968-3986 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3968 | bugman | 2007-11-25 22:15:50 +0100 (Sun, 25 Nov 2007) | 3 lines
Author: bugman
Date: Sun Nov 25 23:58:39 2007
New Revision: 3986
URL: http://svn.gna.org/viewcvs/relax?rev=3986&view=rev
Log:
Bug fix for generic_fns.diffusion_tensor.copy().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://svn.gna.org
Author: bugman
Date: Sun Nov 25 23:53:42 2007
New Revision: 3985
URL: http://svn.gna.org/viewcvs/relax?rev=3985&view=rev
Log:
A fix for a diffusion tensor copying unit test.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/unit_tests/diffusion_te
Author: bugman
Date: Sun Nov 25 23:52:27 2007
New Revision: 3984
URL: http://svn.gna.org/viewcvs/relax?rev=3984&view=rev
Log:
Extended generic_fns.diffusion_tensor.diff_data_exists() to accept an arbitrary
data pipe as an arg.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/gen
Author: bugman
Date: Sun Nov 25 23:49:50 2007
New Revision: 3983
URL: http://svn.gna.org/viewcvs/relax?rev=3983&view=rev
Log:
Implemented the generic_fns.diffusion_tensor.copy() function.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http:
Author: bugman
Date: Sun Nov 25 23:40:17 2007
New Revision: 3982
URL: http://svn.gna.org/viewcvs/relax?rev=3982&view=rev
Log:
Wrote 6 unit tests for the generic_fns.diffusion_tensor.copy() function.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suit
Author: bugman
Date: Sun Nov 25 23:28:49 2007
New Revision: 3981
URL: http://svn.gna.org/viewcvs/relax?rev=3981&view=rev
Log:
Fixed the generic_fns.diffusion_tensor.delete() function.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://sv
Author: bugman
Date: Sun Nov 25 23:26:42 2007
New Revision: 3980
URL: http://svn.gna.org/viewcvs/relax?rev=3980&view=rev
Log:
Wrote 2 unit tests for the failure of generic_fns.diffusion_tensor.display().
This is when there is no data and when there is no data pipe.
Modified:
1.3/test_suite/
Author: bugman
Date: Sun Nov 25 23:23:39 2007
New Revision: 3979
URL: http://svn.gna.org/viewcvs/relax?rev=3979&view=rev
Log:
Wrote 3 unit tests for displaying spherical, spheroidal, and ellipsoidal
diffusion tensors.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Mod
Author: bugman
Date: Sun Nov 25 23:16:57 2007
New Revision: 3978
URL: http://svn.gna.org/viewcvs/relax?rev=3978&view=rev
Log:
Bug fix for the generic_fns.diffusion_tensor.init() function.
This function now works properly too.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/gene
Author: bugman
Date: Sun Nov 25 23:15:53 2007
New Revision: 3977
URL: http://svn.gna.org/viewcvs/relax?rev=3977&view=rev
Log:
Bug fix for the generic_fns.diffusion_tensor.diff_data_exists() function.
The function now works properly.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1
Author: bugman
Date: Sun Nov 25 23:13:37 2007
New Revision: 3976
URL: http://svn.gna.org/viewcvs/relax?rev=3976&view=rev
Log:
Bug fix for the RelaxNoTensorError class.
Modified:
1.3/relax_errors.py
Modified: 1.3/relax_errors.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/relax_errors.py?rev=
Author: bugman
Date: Sun Nov 25 23:01:51 2007
New Revision: 3975
URL: http://svn.gna.org/viewcvs/relax?rev=3975&view=rev
Log:
Merged revisions 3907-3967 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3907 | bugman | 2007-11-25 16:30:00 +0100 (Sun, 25 Nov 2007) | 3 lines
Author: bugman
Date: Sun Nov 25 22:26:54 2007
New Revision: 3974
URL: http://svn.gna.org/viewcvs/relax?rev=3974&view=rev
Log:
Fixed the unit test for the deletion of the diffusion tensor data structure.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_
Author: bugman
Date: Sun Nov 25 22:25:27 2007
New Revision: 3973
URL: http://svn.gna.org/viewcvs/relax?rev=3973&view=rev
Log:
Changed the RelaxError type in the diff tensor failure unit test.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/unit_
Author: bugman
Date: Sun Nov 25 22:23:36 2007
New Revision: 3972
URL: http://svn.gna.org/viewcvs/relax?rev=3972&view=rev
Log:
The last commit, which was supposed to be a bug fix, actually introduced a bug
instead!
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diff
Author: bugman
Date: Sun Nov 25 22:22:36 2007
New Revision: 3971
URL: http://svn.gna.org/viewcvs/relax?rev=3971&view=rev
Log:
Bug fix for the generic_fns.diffusion_tensor.delete() function.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
htt
Author: bugman
Date: Sun Nov 25 22:21:30 2007
New Revision: 3970
URL: http://svn.gna.org/viewcvs/relax?rev=3970&view=rev
Log:
Added 2 unit tests for the failure of the diffusion tensor deletion.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/un
Author: bugman
Date: Sun Nov 25 22:17:35 2007
New Revision: 3969
URL: http://svn.gna.org/viewcvs/relax?rev=3969&view=rev
Log:
Bug fix for generic_fns.diffusion_tensor.delete().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://svn.gna.o
Author: bugman
Date: Sun Nov 25 22:15:50 2007
New Revision: 3968
URL: http://svn.gna.org/viewcvs/relax?rev=3968&view=rev
Log:
Added a unit test for the deletion of diffusion tensor data.
Modified:
1.3/generic_fns/diffusion_tensor.py
1.3/test_suite/unit_tests/diffusion_tensor_testing_base
Author: bugman
Date: Sun Nov 25 22:04:40 2007
New Revision: 3967
URL: http://svn.gna.org/viewcvs/relax?rev=3967&view=rev
Log:
Fixed the initialisation of the diffusion tensor system tests.
The diffusion_tensor.init test now passes.
Added:
1.3/test_suite/unit_tests/_generic_fns/test_diffusio
Author: bugman
Date: Sun Nov 25 21:19:15 2007
New Revision: 3966
URL: http://svn.gna.org/viewcvs/relax?rev=3966&view=rev
Log:
Added one more check to the spherical tensor unit test.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/unit_tests/diff
Author: bugman
Date: Sun Nov 25 21:17:53 2007
New Revision: 3965
URL: http://svn.gna.org/viewcvs/relax?rev=3965&view=rev
Log:
Added 2 more checks to the spheroidal tensor unit test.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/unit_tests/diff
Author: bugman
Date: Sun Nov 25 21:16:11 2007
New Revision: 3964
URL: http://svn.gna.org/viewcvs/relax?rev=3964&view=rev
Log:
Removed some debugging code.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/unit_tests/diffusion_tensor_testing_base.p
Author: bugman
Date: Sun Nov 25 21:15:41 2007
New Revision: 3963
URL: http://svn.gna.org/viewcvs/relax?rev=3963&view=rev
Log:
Fixed for the unit test for the setting up of a ellipsoid diffusion tensor.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_s
Author: bugman
Date: Sun Nov 25 21:11:58 2007
New Revision: 3962
URL: http://svn.gna.org/viewcvs/relax?rev=3962&view=rev
Log:
Fixes to all of generic_fns.diffusion_tensor.ellipsoid().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://sv
Author: bugman
Date: Sun Nov 25 21:08:44 2007
New Revision: 3961
URL: http://svn.gna.org/viewcvs/relax?rev=3961&view=rev
Log:
Wrote a unit test for the setting up of an ellipsoidal diffusion tensor.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suit
Author: bugman
Date: Sun Nov 25 20:50:07 2007
New Revision: 3960
URL: http://svn.gna.org/viewcvs/relax?rev=3960&view=rev
Log:
Fixes to the unit test for the setting up of a spheroidal diffusion tensor.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_s
Author: bugman
Date: Sun Nov 25 20:37:39 2007
New Revision: 3959
URL: http://svn.gna.org/viewcvs/relax?rev=3959&view=rev
Log:
Fixed all calls to generic_fns.angles.wrap_angles().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://svn.gna
Author: bugman
Date: Sun Nov 25 20:36:11 2007
New Revision: 3958
URL: http://svn.gna.org/viewcvs/relax?rev=3958&view=rev
Log:
Removal of references to self and run, and an update to the new data storage
object.
Modified:
1.3/generic_fns/angles.py
Modified: 1.3/generic_fns/angles.py
URL:
h
Author: bugman
Date: Sun Nov 25 20:28:23 2007
New Revision: 3957
URL: http://svn.gna.org/viewcvs/relax?rev=3957&view=rev
Log:
Converted all the methods of the Angles class into module functions.
Modified:
1.3/generic_fns/angles.py
Modified: 1.3/generic_fns/angles.py
URL:
http://svn.gna.org
Author: bugman
Date: Sun Nov 25 20:26:46 2007
New Revision: 3956
URL: http://svn.gna.org/viewcvs/relax?rev=3956&view=rev
Log:
Fixes to generic_fns.diffusion_tensor.fold_angles().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://svn.gna
Author: bugman
Date: Sun Nov 25 20:22:13 2007
New Revision: 3955
URL: http://svn.gna.org/viewcvs/relax?rev=3955&view=rev
Log:
Fixes for generic_fns.diffusion_tensor.spheroid().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://svn.gna.o
Author: bugman
Date: Sun Nov 25 20:14:15 2007
New Revision: 3954
URL: http://svn.gna.org/viewcvs/relax?rev=3954&view=rev
Log:
Wrote a unit test for the setting up of a spheroidal diffusion tensor.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/
Author: bugman
Date: Sun Nov 25 20:08:07 2007
New Revision: 3953
URL: http://svn.gna.org/viewcvs/relax?rev=3953&view=rev
Log:
Removed all references to self from the generic_fns.diffusion_tensor module.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor
Author: bugman
Date: Sun Nov 25 20:04:10 2007
New Revision: 3952
URL: http://svn.gna.org/viewcvs/relax?rev=3952&view=rev
Log:
Bug fixes for the unit test of setting up of a spherical diffusion tensor.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_su
Author: bugman
Date: Sun Nov 25 20:02:01 2007
New Revision: 3951
URL: http://svn.gna.org/viewcvs/relax?rev=3951&view=rev
Log:
Bug fix for generic_fns.diffusion_tensor.test_params().
Removed self and added the cdp alias.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fn
Author: bugman
Date: Sun Nov 25 20:00:06 2007
New Revision: 3950
URL: http://svn.gna.org/viewcvs/relax?rev=3950&view=rev
Log:
Bug fix for generic_fns.diffusion_tensor.set().
The current data pipe is now aliased.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffus
Author: bugman
Date: Sun Nov 25 19:58:33 2007
New Revision: 3949
URL: http://svn.gna.org/viewcvs/relax?rev=3949&view=rev
Log:
Removed all the references to self in
generic_fns.diffusion_tensor.return_data_name().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffu
Author: bugman
Date: Sun Nov 25 19:57:08 2007
New Revision: 3948
URL: http://svn.gna.org/viewcvs/relax?rev=3948&view=rev
Log:
Removed all the references to self in generic_fns.diffusion_tensor.set().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
Author: bugman
Date: Sun Nov 25 19:55:07 2007
New Revision: 3947
URL: http://svn.gna.org/viewcvs/relax?rev=3947&view=rev
Log:
Sent a number of variables into the sphere, spheroid, and ellipsoid functions.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tens
Author: bugman
Date: Sun Nov 25 19:52:48 2007
New Revision: 3946
URL: http://svn.gna.org/viewcvs/relax?rev=3946&view=rev
Log:
Converted the docstring of generic_fns.diffusion_tensor.init() to the epydoc
format.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusi
Author: bugman
Date: Sun Nov 25 19:42:30 2007
New Revision: 3945
URL: http://svn.gna.org/viewcvs/relax?rev=3945&view=rev
Log:
Updated the generic_fns.diffusion_tensor.sphere() function.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http://
Author: bugman
Date: Sun Nov 25 19:35:26 2007
New Revision: 3944
URL: http://svn.gna.org/viewcvs/relax?rev=3944&view=rev
Log:
Updated all the functions to handle the new diff tensor data structure.
Modified:
1.3/generic_fns/diffusion_tensor.py
[This mail would be too long, it was shortened
Author: bugman
Date: Sun Nov 25 19:30:17 2007
New Revision: 3943
URL: http://svn.gna.org/viewcvs/relax?rev=3943&view=rev
Log:
Bug fix for the generic_fns.diffusion_tensor.init() function.
The new data structure is taken into account.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified:
Author: bugman
Date: Sun Nov 25 19:28:46 2007
New Revision: 3942
URL: http://svn.gna.org/viewcvs/relax?rev=3942&view=rev
Log:
Updated the save state file as the diffusion tensor object is now different.
Modified:
1.3/test_suite/shared_data/saved_states/basic_single_pipe.bz2
Modified: 1.3/te
Author: bugman
Date: Sun Nov 25 19:25:12 2007
New Revision: 3941
URL: http://svn.gna.org/viewcvs/relax?rev=3941&view=rev
Log:
Another bug fix for the generic_fns.diffusion_tensor.diff_data_exists()
function.
The white_list object now exists.
Modified:
1.3/generic_fns/diffusion_tensor.py
M
Author: bugman
Date: Sun Nov 25 19:23:15 2007
New Revision: 3940
URL: http://svn.gna.org/viewcvs/relax?rev=3940&view=rev
Log:
Bug fix for the generic_fns.diffusion_tensor.diff_data_exists() function.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
Author: bugman
Date: Sun Nov 25 19:22:06 2007
New Revision: 3939
URL: http://svn.gna.org/viewcvs/relax?rev=3939&view=rev
Log:
Updated the diffusion tensor data structure in the relax data store for the new
relax design.
The object is no longer a dictionary type with keys set to the run names. I
Author: bugman
Date: Sun Nov 25 19:09:28 2007
New Revision: 3938
URL: http://svn.gna.org/viewcvs/relax?rev=3938&view=rev
Log:
Renamed the pipe container object 'diff' to 'diff_tensor'.
Modified:
1.3/data/pipe_container.py
Modified: 1.3/data/pipe_container.py
URL:
http://svn.gna.org/viewcvs
Author: bugman
Date: Sun Nov 25 19:08:02 2007
New Revision: 3937
URL: http://svn.gna.org/viewcvs/relax?rev=3937&view=rev
Log:
generic_fns.diffusion_tensor.init() now uses the new function for determining
the existence of data.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/gen
Author: bugman
Date: Sun Nov 25 19:05:37 2007
New Revision: 3936
URL: http://svn.gna.org/viewcvs/relax?rev=3936&view=rev
Log:
Implemented the function generic_fns.diffusion_tensor.diff_data_exists().
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
Author: bugman
Date: Sun Nov 25 18:55:57 2007
New Revision: 3935
URL: http://svn.gna.org/viewcvs/relax?rev=3935&view=rev
Log:
Bug fix for the RelaxTensorError class.
Modified:
1.3/relax_errors.py
Modified: 1.3/relax_errors.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/relax_errors.py?rev=39
Author: bugman
Date: Sun Nov 25 18:51:13 2007
New Revision: 3934
URL: http://svn.gna.org/viewcvs/relax?rev=3934&view=rev
Log:
Bug fix for the generic_fns.pipes.test() function.
Modified:
1.3/generic_fns/pipes.py
Modified: 1.3/generic_fns/pipes.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/g
Author: bugman
Date: Sun Nov 25 18:42:05 2007
New Revision: 3932
URL: http://svn.gna.org/viewcvs/relax?rev=3932&view=rev
Log:
Added a unit test for the generic_fns.pipes.current() function.
Modified:
1.3/test_suite/unit_tests/_generic_fns/test_pipes.py
Modified: 1.3/test_suite/unit_tests/_g
Author: bugman
Date: Sun Nov 25 18:38:16 2007
New Revision: 3931
URL: http://svn.gna.org/viewcvs/relax?rev=3931&view=rev
Log:
Added a unit test for the generic_fns.pipes.test() function.
Modified:
1.3/test_suite/unit_tests/_generic_fns/test_pipes.py
Modified: 1.3/test_suite/unit_tests/_gene
Author: bugman
Date: Sun Nov 25 18:44:10 2007
New Revision: 3933
URL: http://svn.gna.org/viewcvs/relax?rev=3933&view=rev
Log:
Bug fix for the generic_fns.pipes.current() function.
The function now returns the current pipe rather than printing it!
Modified:
1.3/generic_fns/pipes.py
Modified
Author: bugman
Date: Sun Nov 25 18:30:36 2007
New Revision: 3930
URL: http://svn.gna.org/viewcvs/relax?rev=3930&view=rev
Log:
Bug fix for the generic_fns.diffusion_tensor.init() function.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusion_tensor.py
URL:
http:
Author: bugman
Date: Sun Nov 25 18:25:00 2007
New Revision: 3929
URL: http://svn.gna.org/viewcvs/relax?rev=3929&view=rev
Log:
Docstring fix.
Modified:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified: 1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
URL:
http:/
Author: bugman
Date: Sun Nov 25 18:24:19 2007
New Revision: 3928
URL: http://svn.gna.org/viewcvs/relax?rev=3928&view=rev
Log:
Converted the generic_fns.diffusion_tensor.init() function to the new relax
design.
Modified:
1.3/generic_fns/diffusion_tensor.py
Modified: 1.3/generic_fns/diffusio
Author: bugman
Date: Sun Nov 25 18:19:00 2007
New Revision: 3927
URL: http://svn.gna.org/viewcvs/relax?rev=3927&view=rev
Log:
Updated the copyright notices.
Modified:
1.3/prompt/dx.py
1.3/prompt/value.py
Modified: 1.3/prompt/dx.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/prompt/dx.py?
Author: bugman
Date: Sun Nov 25 18:02:00 2007
New Revision: 3922
URL: http://svn.gna.org/viewcvs/relax?rev=3922&view=rev
Log:
Removed all of the generic_fns class instances from the relax namespace.
All these class methods will be converted to module functions.
Removed:
1.3/generic_fns/main
Author: bugman
Date: Sun Nov 25 18:06:16 2007
New Revision: 3923
URL: http://svn.gna.org/viewcvs/relax?rev=3923&view=rev
Log:
Shifted all the calc_* diffusion tensor functions from generic_fns to data.
This is to break a fatal circular import problem!!!
Modified:
1.3/data/diff_tensor.py
Author: bugman
Date: Sun Nov 25 18:07:39 2007
New Revision: 3924
URL: http://svn.gna.org/viewcvs/relax?rev=3924&view=rev
Log:
Removed an unused import of pi.
Modified:
1.3/data/diff_tensor.py
Modified: 1.3/data/diff_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/data/diff_tensor.py?re
Author: bugman
Date: Sun Nov 25 18:15:16 2007
New Revision: 3925
URL: http://svn.gna.org/viewcvs/relax?rev=3925&view=rev
Log:
Converted all the Diffusion_tensor methods into module functions.
The class no longer exists.
Modified:
1.3/generic_fns/diffusion_tensor.py
[This mail would be too
Author: bugman
Date: Sun Nov 25 18:18:20 2007
New Revision: 3926
URL: http://svn.gna.org/viewcvs/relax?rev=3926&view=rev
Log:
Fixed the prompt modules which were importing the Diffusion_tensor class.
Modified:
1.3/prompt/dx.py
1.3/prompt/value.py
Modified: 1.3/prompt/dx.py
URL:
http://
Author: bugman
Date: Sun Nov 25 17:58:11 2007
New Revision: 3921
URL: http://svn.gna.org/viewcvs/relax?rev=3921&view=rev
Log:
Removed the placement of the Diffusion_tensor class instance into generic_fns.
Modified:
1.3/generic_fns/main.py
Modified: 1.3/generic_fns/main.py
URL:
http://svn.g
Author: bugman
Date: Sun Nov 25 17:50:26 2007
New Revision: 3920
URL: http://svn.gna.org/viewcvs/relax?rev=3920&view=rev
Log:
Wrote two unit tests for the diffusion tensor initialisation.
One is for bad angular units, the other is for setting a spherical tensor.
Modified:
1.3/test_suite/uni
Author: bugman
Date: Sun Nov 25 17:38:22 2007
New Revision: 3919
URL: http://svn.gna.org/viewcvs/relax?rev=3919&view=rev
Log:
Added the import of the generic_fns.diffusion_tensor module.
Modified:
1.3/prompt/diffusion_tensor.py
Modified: 1.3/prompt/diffusion_tensor.py
URL:
http://svn.gna.o
Author: bugman
Date: Sun Nov 25 17:37:00 2007
New Revision: 3918
URL: http://svn.gna.org/viewcvs/relax?rev=3918&view=rev
Log:
Another fix for the params arg unit test for the diffusion_tensor.init() user
function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_diffusion_tensor.py
Modifie
Author: bugman
Date: Sun Nov 25 17:32:34 2007
New Revision: 3917
URL: http://svn.gna.org/viewcvs/relax?rev=3917&view=rev
Log:
Fixed the params arg unit test for the diffusion_tensor.init() user function.
Modified:
1.3/prompt/diffusion_tensor.py
1.3/test_suite/unit_tests/_prompt/test_diff
Author: bugman
Date: Sun Nov 25 17:11:49 2007
New Revision: 3916
URL: http://svn.gna.org/viewcvs/relax?rev=3916&view=rev
Log:
Added a number of tuples of floats of different sizes for the user function
argument unit tests.
Modified:
1.3/test_suite/unit_tests/_prompt/data_types.py
Modified:
Author: bugman
Date: Sun Nov 25 17:05:46 2007
New Revision: 3915
URL: http://svn.gna.org/viewcvs/relax?rev=3915&view=rev
Log:
Implemented the test of diffusion_tensor.copy(), that both arguments cannot be
None.
A unit test for this has also been added.
Modified:
1.3/prompt/diffusion_tensor
Author: bugman
Date: Sun Nov 25 16:59:06 2007
New Revision: 3914
URL: http://svn.gna.org/viewcvs/relax?rev=3914&view=rev
Log:
Bug fix for the diffusion_tensor.copy() user function.
The pipes can be None.
Modified:
1.3/prompt/diffusion_tensor.py
Modified: 1.3/prompt/diffusion_tensor.py
URL:
Author: bugman
Date: Sun Nov 25 16:57:12 2007
New Revision: 3913
URL: http://svn.gna.org/viewcvs/relax?rev=3913&view=rev
Log:
Implemented all the arg unit tests for the diffusion_tensor.copy() user
function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_diffusion_tensor.py
Modified: 1.3
Author: bugman
Date: Sun Nov 25 16:54:50 2007
New Revision: 3912
URL: http://svn.gna.org/viewcvs/relax?rev=3912&view=rev
Log:
Updated all the diffusion tensor user functions to the new relax design.
Modified:
1.3/prompt/diffusion_tensor.py
Modified: 1.3/prompt/diffusion_tensor.py
URL:
http
Author: bugman
Date: Sun Nov 25 16:43:45 2007
New Revision: 3910
URL: http://svn.gna.org/viewcvs/relax?rev=3910&view=rev
Log:
Implemented all the arg unit tests for the diffusion_tensor.init() user
function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_diffusion_tensor.py
Modified: 1.3
Author: bugman
Date: Sun Nov 25 16:37:17 2007
New Revision: 3908
URL: http://svn.gna.org/viewcvs/relax?rev=3908&view=rev
Log:
Removed some unused RelaxError imports.
Modified:
1.3/test_suite/unit_tests/_prompt/test_molecule.py
Modified: 1.3/test_suite/unit_tests/_prompt/test_molecule.py
URL
Author: bugman
Date: Sun Nov 25 16:39:50 2007
New Revision: 3909
URL: http://svn.gna.org/viewcvs/relax?rev=3909&view=rev
Log:
Removed some unused RelaxError imports.
Modified:
1.3/test_suite/unit_tests/_prompt/test_residue.py
Modified: 1.3/test_suite/unit_tests/_prompt/test_residue.py
URL:
Author: bugman
Date: Sun Nov 25 16:45:03 2007
New Revision: 3911
URL: http://svn.gna.org/viewcvs/relax?rev=3911&view=rev
Log:
Removed the run argument from the diffusion_tensor.display() user function.
Modified:
1.3/prompt/diffusion_tensor.py
Modified: 1.3/prompt/diffusion_tensor.py
URL:
h
Author: bugman
Date: Sun Nov 25 16:30:00 2007
New Revision: 3907
URL: http://svn.gna.org/viewcvs/relax?rev=3907&view=rev
Log:
Implemented the params unit test for the diffusion_tensor.init() user function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_diffusion_tensor.py
Modified: 1.3/te
Author: bugman
Date: Sun Nov 25 15:21:19 2007
New Revision: 3904
URL: http://svn.gna.org/viewcvs/relax?rev=3904&view=rev
Log:
A file to be imported by all the prompt user test modules for faking the relax
instance structure.
Added:
1.3/test_suite/unit_tests/_prompt/fake_relax.py
- cop
Author: bugman
Date: Sun Nov 25 15:36:17 2007
New Revision: 3906
URL: http://svn.gna.org/viewcvs/relax?rev=3906&view=rev
Log:
Merged revisions 3872-3905 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3872 | bugman | 2007-11-24 12:00:37 +0100 (Sat, 24 Nov 2007) | 3 lines
Author: bugman
Date: Sun Nov 25 15:29:00 2007
New Revision: 3905
URL: http://svn.gna.org/viewcvs/relax?rev=3905&view=rev
Log:
Updated all the prompt module unit tests to use the new 'fake_relax' structure.
Modified:
1.3/test_suite/unit_tests/_prompt/fake_relax.py
1.3/test_suite/unit_test
Author: bugman
Date: Sun Nov 25 15:14:40 2007
New Revision: 3903
URL: http://svn.gna.org/viewcvs/relax?rev=3903&view=rev
Log:
File rename.
Added:
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
- copied unchanged from r3901,
1.3/test_suite/unit_tests/diffusion_tensor_base.p
Author: bugman
Date: Sun Nov 25 15:14:00 2007
New Revision: 3902
URL: http://svn.gna.org/viewcvs/relax?rev=3902&view=rev
Log:
Created the framework for the unit tests of the diffusion_tensor user functions.
Added:
1.3/test_suite/unit_tests/_prompt/test_diffusion_tensor.py
- copied, cha
Author: bugman
Date: Sun Nov 25 15:11:49 2007
New Revision: 3901
URL: http://svn.gna.org/viewcvs/relax?rev=3901&view=rev
Log:
Set up the base class for unit tests of the diffusion_tensor modules.
Added:
1.3/test_suite/unit_tests/diffusion_tensor_base.py
- copied, changed from r3899,
1
Author: bugman
Date: Sun Nov 25 15:08:29 2007
New Revision: 3900
URL: http://svn.gna.org/viewcvs/relax?rev=3900&view=rev
Log:
Removed the run argument from the diffusion_tensor.init() user function.
Modified:
1.3/prompt/diffusion_tensor.py
Modified: 1.3/prompt/diffusion_tensor.py
URL:
http
Author: bugman
Date: Sun Nov 25 12:17:02 2007
New Revision: 3899
URL: http://svn.gna.org/viewcvs/relax?rev=3899&view=rev
Log:
Removed the selection argument to the
generic_fns.selection.exists_mol_res_spin_data() function.
The associated unit test has also been removed.
Modified:
1.3/gener
Author: bugman
Date: Sun Nov 25 12:12:43 2007
New Revision: 3898
URL: http://svn.gna.org/viewcvs/relax?rev=3898&view=rev
Log:
Big bug fix for the generic_fns.selection.exists_mol_res_spin_data() function.
Modified:
1.3/generic_fns/selection.py
Modified: 1.3/generic_fns/selection.py
URL:
ht
Author: bugman
Date: Sun Nov 25 12:08:22 2007
New Revision: 3897
URL: http://svn.gna.org/viewcvs/relax?rev=3897&view=rev
Log:
Wrote 5 unit tests for the generic_fns.selection.exists_mol_res_spin_data()
function.
Modified:
1.3/test_suite/unit_tests/_generic_fns/test_selection.py
Modified: 1
Author: bugman
Date: Sun Nov 25 11:54:12 2007
New Revision: 3896
URL: http://svn.gna.org/viewcvs/relax?rev=3896&view=rev
Log:
Updated the data model redesign document. All the sequence user functions are
implemented.
Modified:
1.3/docs/data_model_redesign
Modified: 1.3/docs/data_model_red
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