Author: bugman
Date: Fri Nov 23 15:29:47 2007
New Revision: 3845
URL: http://svn.gna.org/viewcvs/relax?rev=3845&view=rev
Log:
Converted the diplay() class method to a module function.
Modified:
1.3/generic_fns/sequence.py
Modified: 1.3/generic_fns/sequence.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/sequence.py?rev=3845&r1=3844&r2=3845&view=diff
==============================================================================
--- 1.3/generic_fns/sequence.py (original)
+++ 1.3/generic_fns/sequence.py Fri Nov 23 15:29:47 2007
@@ -25,6 +25,21 @@
from relax_errors import RelaxError, RelaxFileEmptyError,
RelaxNoPdbChainError, RelaxNoPipeError, RelaxNoSequenceError, RelaxSequenceError
from relax_io import extract_data, strip
+
+
+def display(run=None):
+ """Function for displaying the sequence."""
+
+ # Test if the sequence data is loaded.
+ if not relax_data_store.res.has_key(run):
+ raise RelaxNoSequenceError, run
+
+ # Print a header.
+ print "%-8s%-8s%-10s" % ("Number", "Name", "Selected")
+
+ # Print the sequence.
+ for i in xrange(len(relax_data_store.res[run])):
+ print "%-8i%-8s%-10i" % (relax_data_store.res[run][i].num,
relax_data_store.res[run][i].name, relax_data_store.res[run][i].select)
def read(file=None, dir=None, mol_name_col=None, res_num_col=0,
res_name_col=1, spin_num_col=None, spin_name_col=None, sep=None):
@@ -225,25 +240,6 @@
self.relax = relax
- def display(self, run=None):
- """Function for displaying the sequence."""
-
- # Test if the run exists.
- if not run in relax_data_store.run_names:
- raise RelaxNoPipeError, run
-
- # Test if the sequence data is loaded.
- if not relax_data_store.res.has_key(run):
- raise RelaxNoSequenceError, run
-
- # Print a header.
- print "%-8s%-8s%-10s" % ("Number", "Name", "Selected")
-
- # Print the sequence.
- for i in xrange(len(relax_data_store.res[run])):
- print "%-8i%-8s%-10i" % (relax_data_store.res[run][i].num,
relax_data_store.res[run][i].name, relax_data_store.res[run][i].select)
-
-
def load_PDB_sequence(self, run=None):
"""Function for loading the sequence out of a PDB file.
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