Author: bugman
Date: Wed Feb 25 13:58:45 2015
New Revision: 27719
URL: http://svn.gna.org/viewcvs/relax?rev=27719&view=rev
Log:
Implemented the new 'inv' argument for the selection() structural object method.
This allows for all atoms not matching the atom ID string to be selected. The
unit tes
branches/frame_order_cleanup/test_suite/unit_tests/_pipe_control/_structure/test_internal.py
Wed Feb 25 14:00:53 2015
@@ -1,6 +1,6 @@
###
#
Author: bugman
Date: Wed Feb 25 14:16:04 2015
New Revision: 27721
URL: http://svn.gna.org/viewcvs/relax?rev=27721&view=rev
Log:
Added the new 'atom_id' argument to the frame_order.distribute user function.
This uses the new inverse selection functionality recently introduced into the
trunk to de
Author: bugman
Date: Mon Mar 2 11:58:42 2015
New Revision: 27722
URL: http://svn.gna.org/viewcvs/relax?rev=27722&view=rev
Log:
Improvement for the structure.mean user function.
This can now be used to store an averaged structure in an empty data pipe.
Previously structural
data needed to be pr
Author: bugman
Date: Mon Mar 2 15:32:59 2015
New Revision: 27723
URL: http://svn.gna.org/viewcvs/relax?rev=27723&view=rev
Log:
Bug fix for the results.write user function when loading relax state files.
The results.write user function can load not only the results file consisting
of a single da
Author: bugman
Date: Mon Mar 2 15:34:59 2015
New Revision: 27724
URL: http://svn.gna.org/viewcvs/relax?rev=27724&view=rev
Log:
Fix for the rdc.write user function.
The check for the missing rdc_data_types variable in the interatomic containers
is now more
comprehensive and checks for the presen
Author: bugman
Date: Mon Mar 2 16:55:08 2015
New Revision: 27725
URL: http://svn.gna.org/viewcvs/relax?rev=27725&view=rev
Log:
Created a system test to show a limitation of the rdc.copy user function.
Currently, it cannot work when spin systems in two data pipes are different.
The system test
Author: bugman
Date: Mon Mar 2 17:16:44 2015
New Revision: 27726
URL: http://svn.gna.org/viewcvs/relax?rev=27726&view=rev
Log:
Simplification of the new Rdc.test_rdc_copy_different_spins system test.
This no longer tests the deletion of interatomic data containers by the
spin.delete user functi
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2011-2013 Edward d'Auvergne #
+# Copyright (C) 2011-2
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2003-2014 Edward d'Auvergne #
+# Copyright (C) 2003-2
Author: bugman
Date: Mon Mar 2 17:21:04 2015
New Revision: 27728
URL: http://svn.gna.org/viewcvs/relax?rev=27728&view=rev
Log:
Added a printout to the sequence.attach_protons user function listing all the
newly created spins.
Modified:
trunk/pipe_control/sequence.py
Modified: trunk/pipe_c
Author: bugman
Date: Mon Mar 2 17:27:21 2015
New Revision: 27731
URL: http://svn.gna.org/viewcvs/relax?rev=27731&view=rev
Log:
Another small fix for the new Rdc.test_rdc_copy_different_spins system test.
The rdc.copy user function requires the pipe_to argument to be supplied in this
case.
Mod
Author: bugman
Date: Mon Mar 2 17:24:08 2015
New Revision: 27730
URL: http://svn.gna.org/viewcvs/relax?rev=27730&view=rev
Log:
Some more fixes for the Rdc.test_rdc_copy_different_spins system test.
The residue.delete and not spin.delete user function is required to delete the
sequence data.
M
Author: bugman
Date: Mon Mar 2 18:09:12 2015
New Revision: 27732
URL: http://svn.gna.org/viewcvs/relax?rev=27732&view=rev
Log:
Expansion of the Rdc.test_rdc_copy_different_spins system test.
The interatomic data containers are now defined via the interatom.define user
function, which
requires t
c.py (original)
+++ trunk/pipe_control/interatomic.py Mon Mar 2 18:13:09 2015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2012-2014 E
Author: bugman
Date: Mon Mar 2 18:22:18 2015
New Revision: 27735
URL: http://svn.gna.org/viewcvs/relax?rev=27735&view=rev
Log:
Expanded the functionality of the rdc.copy user function.
The user function will now operate on two data pipes with different spin
sequences. If the
interatomic data c
Author: bugman
Date: Mon Mar 2 18:19:26 2015
New Revision: 27734
URL: http://svn.gna.org/viewcvs/relax?rev=27734&view=rev
Log:
Some more modifications for the Rdc.test_rdc_copy_different_spins system test.
One of the interatomic data containers does not have RDC data, as it is not
present in th
Author: bugman
Date: Tue Mar 3 13:43:44 2015
New Revision: 27736
URL: http://svn.gna.org/viewcvs/relax?rev=27736&view=rev
Log:
Modified the rdc.copy user function to printout all copied RDC values and
errors.
Modified:
trunk/pipe_control/rdc.py
Modified: trunk/pipe_control/rdc.py
URL:
ht
Author: bugman
Date: Tue Mar 3 13:51:18 2015
New Revision: 27737
URL: http://svn.gna.org/viewcvs/relax?rev=27737&view=rev
Log:
Created the Rdc.test_rdc_copy_back_calc system test.
This will be used to implement the back_calc Boolean argument for the rdc.copy
user function to
allow not only meas
Author: bugman
Date: Tue Mar 3 13:53:48 2015
New Revision: 27738
URL: http://svn.gna.org/viewcvs/relax?rev=27738&view=rev
Log:
Modified the rdc.copy printout of RDCs to occur for each alignment ID.
Modified:
trunk/pipe_control/rdc.py
Modified: trunk/pipe_control/rdc.py
URL:
http://svn.gna
=======
--- trunk/user_functions/rdc.py (original)
+++ trunk/user_functions/rdc.py Tue Mar 3 14:01:13 2015
@@ -1,6 +1,6 @@
###
#
Author: bugman
Date: Tue Mar 3 14:06:31 2015
New Revision: 27740
URL: http://svn.gna.org/viewcvs/relax?rev=27740&view=rev
Log:
Small formatting change for the rdc.copy user function printouts.
Modified:
trunk/pipe_control/rdc.py
Modified: trunk/pipe_control/rdc.py
URL:
http://svn.gna.org/
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2011-2013 Edward d'Auvergne #
+# Copyright (C) 2011-2
Author: bugman
Date: Tue Mar 3 14:34:41 2015
New Revision: 27742
URL: http://svn.gna.org/viewcvs/relax?rev=27742&view=rev
Log:
Fix for the pcs.read user function.
The problem was caught by the new Pcs.test_pcs_copy_different_spins system
test. If the spin system
does not exist in the current d
Author: bugman
Date: Tue Mar 3 14:38:33 2015
New Revision: 27743
URL: http://svn.gna.org/viewcvs/relax?rev=27743&view=rev
Log:
Added a printout of the alignment ID for the pcs.copy user function.
This is to match the rdc.copy user function.
Modified:
trunk/pipe_control/pcs.py
Modified: tr
Author: bugman
Date: Tue Mar 3 14:43:18 2015
New Revision: 27744
URL: http://svn.gna.org/viewcvs/relax?rev=27744&view=rev
Log:
Created the Pcs.test_pcs_copy_back_calc system test.
This will be used to implement the back_calc Boolean argument for the pcs.copy
user function to
allow not only meas
=
--- trunk/user_functions/pcs.py (original)
+++ trunk/user_functions/pcs.py Tue Mar 3 14:46:20 2015
@@ -1,6 +1,6 @@
#######
# #
-# Copyright (C) 2003-2014 Edward d'Auvergne #
+# Copyright (C) 2003-2015 Edward d'
Author: bugman
Date: Tue Mar 3 15:04:47 2015
New Revision: 27746
URL: http://svn.gna.org/viewcvs/relax?rev=27746&view=rev
Log:
Added full per-alignment data printouts to the pcs.copy user function to match
rdc.copy.
The feedback is important to know what was actually copied.
Modified:
tru
Author: bugman
Date: Tue Mar 3 15:09:00 2015
New Revision: 27747
URL: http://svn.gna.org/viewcvs/relax?rev=27747&view=rev
Log:
Modified the pcs.copy user function to handle different spin sequence between
data pipes.
Modified:
trunk/pipe_control/pcs.py
Modified: trunk/pipe_control/pcs.py
Author: bugman
Date: Tue Mar 3 15:13:03 2015
New Revision: 27748
URL: http://svn.gna.org/viewcvs/relax?rev=27748&view=rev
Log:
Fixes for the Pcs.test_pcs_copy_different_spins and Pcs.test_pcs_copy_back_calc
system tests.
Modified:
trunk/test_suite/system_tests/pcs.py
Modified: trunk/test_
Author: bugman
Date: Tue Mar 3 15:47:17 2015
New Revision: 27749
URL: http://svn.gna.org/viewcvs/relax?rev=27749&view=rev
Log:
Fix for the pcs.copy user function for a recently introduced problem (r27747).
The data pipe for the spin_loop() function must be supplied.
Modified:
trunk/pipe_co
Author: bugman
Date: Tue Mar 3 15:48:35 2015
New Revision: 27750
URL: http://svn.gna.org/viewcvs/relax?rev=27750&view=rev
Log:
The pcs.copy user function now skips deselected spins.
Modified:
trunk/pipe_control/pcs.py
Modified: trunk/pipe_control/pcs.py
URL:
http://svn.gna.org/viewcvs/rel
Author: bugman
Date: Tue Mar 3 15:59:41 2015
New Revision: 27751
URL: http://svn.gna.org/viewcvs/relax?rev=27751&view=rev
Log:
Modified the N_state_model.test_data_copying system test to skip deselected
spins.
Modified:
trunk/test_suite/system_tests/n_state_model.py
Modified: trunk/test_s
Author: bugman
Date: Tue Mar 3 16:02:51 2015
New Revision: 27752
URL: http://svn.gna.org/viewcvs/relax?rev=27752&view=rev
Log:
Merged revisions 27722-27751 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27722 | bugman | 2015-03-02 11:58:42 +0100 (Mon, 02 Mar 2015) |
Author: bugman
Date: Tue Mar 3 16:33:21 2015
New Revision: 27754
URL: http://svn.gna.org/viewcvs/relax?rev=27754&view=rev
Log:
Added more checks to the three Rdc.test_rdc_copy* system tests.
Modified:
trunk/test_suite/system_tests/rdc.py
Modified: trunk/test_suite/system_tests/rdc.py
URL:
Author: bugman
Date: Tue Mar 3 16:30:49 2015
New Revision: 27753
URL: http://svn.gna.org/viewcvs/relax?rev=27753&view=rev
Log:
Added more checks to the three Pcs.test_pcs_copy* system tests.
Modified:
trunk/test_suite/system_tests/pcs.py
Modified: trunk/test_suite/system_tests/pcs.py
URL:
Author: bugman
Date: Tue Mar 3 16:46:48 2015
New Revision: 27755
URL: http://svn.gna.org/viewcvs/relax?rev=27755&view=rev
Log:
Created the Rdc.test_calc_q_factors_no_tensor system test.
This is to demonstrate a failure in the rdc.calc_q_factors user function when
no alignment tensor is
present.
Author: bugman
Date: Tue Mar 3 16:49:03 2015
New Revision: 27756
URL: http://svn.gna.org/viewcvs/relax?rev=27756&view=rev
Log:
Fixes for the rdc.calc_q_factors user function for when no alignment tensor is
present.
This was caught by the Rdc.test_calc_q_factors_no_tensor system test. Now if
n
Author: bugman
Date: Tue Mar 3 17:03:47 2015
New Revision: 27757
URL: http://svn.gna.org/viewcvs/relax?rev=27757&view=rev
Log:
Merged revisions 27753-27756 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27753 | bugman | 2015-03-03 16:30:49 +0100 (Tue, 03 Mar 2015) |
Author: bugman
Date: Tue Mar 3 17:10:38 2015
New Revision: 27758
URL: http://svn.gna.org/viewcvs/relax?rev=27758&view=rev
Log:
The Rdc.test_rdc_copy_* system tests now check for the 'rdc_data_types' data
structure.
This is in the Rdc.test_rdc_copy_different_spins and
Rdc.test_rdc_copy_back_cal
Author: bugman
Date: Tue Mar 3 17:42:30 2015
New Revision: 27765
URL: http://svn.gna.org/viewcvs/relax?rev=27765&view=rev
Log:
Added the 'title' and 'subtitle' arguments to the pcs.corr_plot user function.
This problem was detected by the new Pcs.test_corr_plot system test. The
pcs.corr_plot u
Author: bugman
Date: Tue Mar 3 17:22:14 2015
New Revision: 27762
URL: http://svn.gna.org/viewcvs/relax?rev=27762&view=rev
Log:
Merged revisions 27758-27761 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27758 | bugman | 2015-03-03 17:10:38 +0100 (Tue, 03 Mar 2015) |
Author: bugman
Date: Tue Mar 3 17:50:29 2015
New Revision: 27768
URL: http://svn.gna.org/viewcvs/relax?rev=27768&view=rev
Log:
Merged revisions 27763-27767 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27763 | bugman | 2015-03-03 17:34:39 +0100 (Tue, 03 Mar 2015) |
Author: bugman
Date: Tue Mar 3 17:15:33 2015
New Revision: 27760
URL: http://svn.gna.org/viewcvs/relax?rev=27760&view=rev
Log:
The Rdc.test_rdc_copy_* system tests now check for the 'absolute_rdc' data
structure.
This is in the Rdc.test_rdc_copy_different_spins and
Rdc.test_rdc_copy_back_calc
Author: bugman
Date: Tue Mar 3 17:40:22 2015
New Revision: 27764
URL: http://svn.gna.org/viewcvs/relax?rev=27764&view=rev
Log:
Created the Pcs.test_corr_plot system test to check the pcs.corr_plot user
function.
This user function is poorly tested, and this test triggers a series of bugs.
Mod
Author: bugman
Date: Tue Mar 3 17:34:39 2015
New Revision: 27763
URL: http://svn.gna.org/viewcvs/relax?rev=27763&view=rev
Log:
Created the Rdc.test_corr_plot system test to check the rdc.corr_plot user
function.
This shows that this poorly tested function works correctly.
Modified:
trunk/
Author: bugman
Date: Tue Mar 3 17:18:14 2015
New Revision: 27761
URL: http://svn.gna.org/viewcvs/relax?rev=27761&view=rev
Log:
Expanded the rdc.copy user function to copy the RDC data type and absolute RDC
flag information.
Modified:
trunk/pipe_control/rdc.py
Modified: trunk/pipe_control/
Author: bugman
Date: Tue Mar 3 17:46:21 2015
New Revision: 27766
URL: http://svn.gna.org/viewcvs/relax?rev=27766&view=rev
Log:
Fix for the pcs.corr_plot user function when the spin containers have no
element information.
Modified:
trunk/pipe_control/pcs.py
Modified: trunk/pipe_control/pcs
Author: bugman
Date: Tue Mar 3 17:11:47 2015
New Revision: 27759
URL: http://svn.gna.org/viewcvs/relax?rev=27759&view=rev
Log:
Removed a debugging printout.
Modified:
trunk/test_suite/system_tests/rdc.py
Modified: trunk/test_suite/system_tests/rdc.py
URL:
http://svn.gna.org/viewcvs/relax/
Author: bugman
Date: Tue Mar 3 17:50:02 2015
New Revision: 27767
URL: http://svn.gna.org/viewcvs/relax?rev=27767&view=rev
Log:
Completed the Pcs.test_corr_plot system test.
The file contents are now known and have been carefully checking in Grace.
Modified:
trunk/test_suite/system_tests/pc
Author: bugman
Date: Wed Mar 4 13:33:45 2015
New Revision: 27769
URL: http://svn.gna.org/viewcvs/relax?rev=27769&view=rev
Log:
Clarification of the RDC and PCS Q factors.
This affects the rdc.calc_q_factors and pcs.calc_q_factors user functions, as
well as all other
operations involving the cal
Author: bugman
Date: Wed Mar 4 13:46:15 2015
New Revision: 27770
URL: http://svn.gna.org/viewcvs/relax?rev=27770&view=rev
Log:
Merged revisions 27769 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27769 | bugman | 2015-03-04 13:33:45 +0100 (Wed, 04 Mar 2015) | 12 lin
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2006-2013 Edward d'Auvergne #
+# Copyright (C) 2006-2015 Edward d'Auvergne #
#
14:30:30 2015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2007-2014 Edward d'Auvergne #
+# Copyright (C) 2007-2015 Edward d'Auvergne #
# #
# This file is part
Author: bugman
Date: Wed Mar 4 14:34:07 2015
New Revision: 27773
URL: http://svn.gna.org/viewcvs/relax?rev=27773&view=rev
Log:
Modified the pipe_control.align_tensor.align_data_exists() function to handle
no tensor IDs.
If no tensor ID is supplied, this will then return True if any alignment da
Author: bugman
Date: Wed Mar 4 14:47:21 2015
New Revision: 27774
URL: http://svn.gna.org/viewcvs/relax?rev=27774&view=rev
Log:
Improvement for the align_tensor.copy user function.
The user function has been modified to allow all alignment tensors to be copied
between two data
pipes. This allow
t_suite/system_tests/align_tensor.py
(original)
+++ branches/frame_order_cleanup/test_suite/system_tests/align_tensor.py
Wed Mar 4 14:48:39 2015
@@ -1,6 +1,6 @@
#######
#
Author: bugman
Date: Wed Mar 4 15:10:39 2015
New Revision: 27776
URL: http://svn.gna.org/viewcvs/relax?rev=27776&view=rev
Log:
Fixes for the align_tensor.copy user function argument unit tests.
The tensor_from and tensor_to arguments can now be None.
Modified:
trunk/test_suite/unit_tests/_
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2003-2014 Edward d'Auvergne #
+# Copyright (C) 2003-2
Author: bugman
Date: Wed Mar 4 15:23:13 2015
New Revision: 2
URL: http://svn.gna.org/viewcvs/relax?rev=2&view=rev
Log:
Created the Align_tensor.test_copy_pipes_sims system test.
This demonstrates a failure of the align_tensor.copy user function when Monte
Carlo simulated
tensors are pre
Author: bugman
Date: Wed Mar 4 15:32:53 2015
New Revision: 27779
URL: http://svn.gna.org/viewcvs/relax?rev=27779&view=rev
Log:
Deleted the data_store.align_tensor.AlignTensorSimList.append() method.
This replacement list method was proving fatal when copy.deepcopy() is called
on the alignment
t
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2003-2014 Edward d'Auvergne #
+# Copyright (C) 2003-2
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2003-2014 Edward d'Auvergne #
+# Copyright (C) 2003-2
Author: bugman
Date: Thu Mar 5 11:02:08 2015
New Revision: 27782
URL: http://svn.gna.org/viewcvs/relax?rev=27782&view=rev
Log:
Huge speed up for loading results and state files with Monte Carlo simulation
alignment tensors.
The reading of the alignment tensor component of XML formatted results
Author: bugman
Date: Thu Mar 5 14:49:00 2015
New Revision: 27783
URL: http://svn.gna.org/viewcvs/relax?rev=27783&view=rev
Log:
Added an extra check for the assembly of RDC data.
This is in the pipe_control.rdc.return_rdc_data() function and the check is for
any unit vectors set
to None, which i
Author: bugman
Date: Thu Mar 5 15:17:51 2015
New Revision: 27785
URL: http://svn.gna.org/viewcvs/relax?rev=27785&view=rev
Log:
Added a new warning to the interatom.unit_vectors user function if data is
missing.
This is to aid in detecting problems earlier before unit vectors of None are
encoun
Author: bugman
Date: Thu Mar 5 15:05:28 2015
New Revision: 27784
URL: http://svn.gna.org/viewcvs/relax?rev=27784&view=rev
Log:
Improved the RelaxError message from the RDC assembly function when unit
vectors are None.
Modified:
trunk/pipe_control/rdc.py
Modified: trunk/pipe_control/rdc.py
Author: bugman
Date: Mon Mar 9 11:48:12 2015
New Revision: 27786
URL: http://svn.gna.org/viewcvs/relax?rev=27786&view=rev
Log:
Improvements for the rdc.weight and pcs.weight user functions.
The spin_id argument can now be set to None to allow all spins or interatomic
data containers to be
set.
Author: bugman
Date: Mon Mar 9 16:53:08 2015
New Revision: 27787
URL: http://svn.gna.org/viewcvs/relax?rev=27787&view=rev
Log:
Modified the rdc.corr_plot user function to skip deselected interatomic data
containers.
This would normally happen as no back-calculated data is normally present.
Ho
Author: bugman
Date: Tue Mar 10 09:35:38 2015
New Revision: 27788
URL: http://svn.gna.org/viewcvs/relax?rev=27788&view=rev
Log:
Merged revisions 27782-27787 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27782 | bugman | 2015-03-05 11:02:08 +0100 (Thu, 05 Mar 2015) |
Author: bugman
Date: Tue Mar 10 09:37:20 2015
New Revision: 27789
URL: http://svn.gna.org/viewcvs/relax?rev=27789&view=rev
Log:
Created the Sequence.test_bug_23372_read_csv system test.
This is to catch bug #23372 (https://gna.org/bugs/?23372), the sequence.read
failure with CSV files.
It uses a
Author: bugman
Date: Tue Mar 10 09:37:20 2015
New Revision: 27790
URL: http://svn.gna.org/viewcvs/relax?rev=27790&view=rev
Log:
Merged revisions
27707-27714,27717-27719,27722-27751,27753-27756,27758-27761,27763-27767,27769,27771-27774,27776-27780,27782-27787
via svnmerge from
svn+ssh://bug...@s
Author: bugman
Date: Tue Mar 10 09:39:07 2015
New Revision: 27791
URL: http://svn.gna.org/viewcvs/relax?rev=27791&view=rev
Log:
Merged revisions 27789 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27789 | bugman | 2015-03-10 09:37:20 +0100 (Tue, 10 Mar 2015) | 7 line
Author: bugman
Date: Tue Mar 10 09:39:09 2015
New Revision: 27792
URL: http://svn.gna.org/viewcvs/relax?rev=27792&view=rev
Log:
Merged revisions 27789 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27789 | bugman | 2015-03-10 09:37:20 +0100 (Tue, 10 Mar 2015) | 7 line
Author: bugman
Date: Tue Mar 10 09:47:19 2015
New Revision: 27793
URL: http://svn.gna.org/viewcvs/relax?rev=27793&view=rev
Log:
Converted the lib.sequence.validate_sequence() to the checking function design.
This is the checking function design documented at
http://wiki.nmr-relax.com/Relax_source
Author: bugman
Date: Tue Mar 10 09:48:39 2015
New Revision: 27794
URL: http://svn.gna.org/viewcvs/relax?rev=27794&view=rev
Log:
Small typo fix for the Sequence.test_bug_23372_read_csv system test.
Modified:
trunk/test_suite/system_tests/sequence.py
Modified: trunk/test_suite/system_tests/se
Author: bugman
Date: Tue Mar 10 09:50:13 2015
New Revision: 27796
URL: http://svn.gna.org/viewcvs/relax?rev=27796&view=rev
Log:
Merged revisions 27793-27794 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27793 | bugman | 2015-03-10 09:47:19 +0100 (Tue, 10 Mar 2015) |
Author: bugman
Date: Tue Mar 10 09:50:11 2015
New Revision: 27795
URL: http://svn.gna.org/viewcvs/relax?rev=27795&view=rev
Log:
Merged revisions 27793-27794 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27793 | bugman | 2015-03-10 09:47:19 +0100 (Tue, 10 Mar 2015) |
Author: bugman
Date: Tue Mar 10 09:50:16 2015
New Revision: 27797
URL: http://svn.gna.org/viewcvs/relax?rev=27797&view=rev
Log:
Fix for bug #23372 (https://gna.org/bugs/?23372), the sequence.read failure
with CSV files.
The problem was that the sep argument was not being passed all the way to th
Author: bugman
Date: Tue Mar 10 09:52:58 2015
New Revision: 27798
URL: http://svn.gna.org/viewcvs/relax?rev=27798&view=rev
Log:
Merged revisions 27797 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27797 | bugman | 2015-03-10 09:50:16 +0100 (Tue, 10 Mar 2015) | 6 line
Author: bugman
Date: Tue Mar 10 09:52:59 2015
New Revision: 27799
URL: http://svn.gna.org/viewcvs/relax?rev=27799&view=rev
Log:
Merged revisions 27797 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r27797 | bugman | 2015-03-10 09:50:16 +0100 (Tue, 10 Mar 2015) | 6 line
Author: bugman
Date: Tue Mar 10 10:05:25 2015
New Revision: 27800
URL: http://svn.gna.org/viewcvs/relax?rev=27800&view=rev
Log:
Fix for the lib.sequence.check_sequence checking object.
Although rarely used, the check for the spin number was incorrect and half of
the checks were
instead for the r
Author: bugman
Date: Tue Mar 10 10:13:33 2015
New Revision: 27801
URL: http://svn.gna.org/viewcvs/relax?rev=27801&view=rev
Log:
Added the raise_flag argument to the lib.sequence.read_spin_data() function.
This is to allow the missing data RelaxError to be deactivated.
Modified:
trunk/lib/se
015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2004-2014 Edward d'Auvergne #
+# Copyright (C) 2004-2015 Edward d'Auvergne #
# Copyrigh
Author: bugman
Date: Tue Mar 10 18:00:53 2015
New Revision: 27803
URL: http://svn.gna.org/viewcvs/relax?rev=27803&view=rev
Log:
Python 3 improvement for the rdc.corr_plot and pcs.corr_plot user functions.
The world view is now set in floating point numbers. In Python 2, the
math.ceil() and math
Author: bugman
Date: Tue Mar 10 18:36:55 2015
New Revision: 27804
URL: http://svn.gna.org/viewcvs/relax?rev=27804&view=rev
Log:
Improvements for the pcs.structural_noise user function.
The check for the presence of PCS data for points to skip now includes checking
for PCS values of
None. And th
=
--- trunk/test_suite/system_tests/noe.py(original)
+++ trunk/test_suite/system_tests/noe.pyTue Mar 10 18:58:41 2015
@@ -1,6 +1,6 @@
#######
#
hu Mar
12 12:38:58 2015
@@ -1,6 +1,6 @@
###
# #
-# Copyright (C) 2009-2014 Edward d'Auvergne #
+# Copyright
Author: bugman
Date: Fri Mar 13 11:39:16 2015
New Revision: 27807
URL: http://svn.gna.org/viewcvs/relax?rev=27807&view=rev
Log:
Epydoc documentation fix for the lib.structure.pdb_write_handle_atom_name()
function.
Modified:
trunk/lib/structure/pdb_write.py
Modified: trunk/lib/structure/pdb
Author: bugman
Date: Fri Mar 13 11:39:46 2015
New Revision: 27808
URL: http://svn.gna.org/viewcvs/relax?rev=27808&view=rev
Log:
relax version 3.3.7.
This is a major feature and bugfix release. New features include the
statistics.aic and
statistics.model user functions, plotting API advancements
Author: bugman
Date: Fri Mar 13 11:42:44 2015
New Revision: 27809
URL: http://svn.gna.org/viewcvs/relax?rev=27809&view=rev
Log:
Updated the version number to relax 3.3.7.
Modified:
tags/3.3.7/version.py
Modified: tags/3.3.7/version.py
URL:
http://svn.gna.org/viewcvs/relax/tags/3.3.7/versio
Author: bugman
Date: Fri Mar 13 11:58:39 2015
New Revision: 27810
URL: http://svn.gna.org/viewcvs/relax?rev=27810&view=rev
Log:
Added the relax 3.3.7 PDF manual to the repository.
Added:
tags/3.3.7/docs/relax.pdf (with props)
Added: tags/3.3.7/docs/relax.pdf
URL:
http://svn.gna.org/viewc
Author: bugman
Date: Fri Mar 13 12:30:20 2015
New Revision: 27811
URL: http://svn.gna.org/viewcvs/relax?rev=27811&view=rev
Log:
Updated the CHANGES document for relax 3.3.7.
Modified:
tags/3.3.7/docs/CHANGES
[This mail would be too long, it was shortened to contain the URLs only.]
Modified
Author: bugman
Date: Fri Mar 13 15:13:45 2015
New Revision: 27812
URL: http://svn.gna.org/viewcvs/relax?rev=27812&view=rev
Log:
Changed the download links for relax 3.2.2 and 3.3.0 to 3.3.5.
These now point to http://www.nmr-relax.com/download_request.html, as the
distribution files have
been re
Author: bugman
Date: Fri Mar 13 15:25:23 2015
New Revision: 27813
URL: http://svn.gna.org/viewcvs/relax?rev=27813&view=rev
Log:
Updated the relax HTML manual at http://www.nmr-relax.com/manual/index.html to
version 3.3.6.
Added:
website/manual/office-chart-pie.png (with props)
website
Author: bugman
Date: Fri Mar 13 15:33:07 2015
New Revision: 27814
URL: http://svn.gna.org/viewcvs/relax?rev=27814&view=rev
Log:
Updated the relax API documentation at http://www.nmr-relax.com/api/3.3/ to
version 3.3.7.
Added:
website/api/3.3/lib.plotting.grace-module.html
website/api/3.
Author: bugman
Date: Fri Mar 13 15:35:24 2015
New Revision: 27815
URL: http://svn.gna.org/viewcvs/relax?rev=27815&view=rev
Log:
Updated the http://www.nmr-relax.com/download.html webpage for the relax 3.3.7
release.
Modified:
website/download.html
[This mail would be too long, it was short
Author: bugman
Date: Fri Mar 13 15:42:37 2015
New Revision: 27816
URL: http://svn.gna.org/viewcvs/relax?rev=27816&view=rev
Log:
Backported the relax 3.3.7 CHANGES file changes to trunk.
The command used was:
svn merge -r27810:r27811 svn+ssh://bug...@svn.gna.org/svn/relax/tags/3.3.7 .
Modified:
Author: bugman
Date: Fri Mar 13 16:21:48 2015
New Revision: 27817
URL: http://svn.gna.org/viewcvs/relax?rev=27817&view=rev
Log:
Updated the relax version number to 3.3.7 on the
http://www.nmr-relax.com/api/index.html webpage.
Modified:
website/api/index.html
Modified: website/api/index.htm
Author: bugman
Date: Fri Mar 13 17:55:09 2015
New Revision: 27818
URL: http://svn.gna.org/viewcvs/relax?rev=27818&view=rev
Log:
Spacing fixes in the CHANGES document.
Modified:
trunk/docs/CHANGES
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: trunk/docs
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