r27819 - /trunk/pipe_control/reset.py

2015-03-17 Thread edward
-# Copyright (C) 2003-2013 Edward d'Auvergne # +# Copyright (C) 2003-2015 Edward d'Auvergne # # # # This file is part of the program relax

r27820 - /trunk/devel_scripts/memory_management/GUI_uf_align_tensor_init.py

2015-03-17 Thread edward
Author: bugman Date: Tue Mar 17 12:21:57 2015 New Revision: 27820 URL: http://svn.gna.org/viewcvs/relax?rev=27820&view=rev Log: Created a GUI memory management debugging script for the align_tensor.init user function. This repetitively calls the reset, pipe.create and align_tensor.init user fun

r27821 - /website/head.html

2015-03-27 Thread edward
Author: bugman Date: Fri Mar 27 14:23:54 2015 New Revision: 27821 URL: http://svn.gna.org/viewcvs/relax?rev=27821&view=rev Log: Fix for the viewport tag for mobile device support. This is in the SSI head element for all pages at http://www.nmr-relax.com. Modified: website/head.html Modifi

r27822 - in /trunk/gui: components/relax_data.py spin_viewer/frame.py

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 09:14:10 2015 New Revision: 27822 URL: http://svn.gna.org/viewcvs/relax?rev=27822&view=rev Log: Resized all fixed-sized GUI wizards to fit on 1024x768 pixel wide displays. The problem was reported by Lora Picton in the thread starting at http://thread.gmane.org/gma

r27823 - /tags/3.3.8/

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 09:20:39 2015 New Revision: 27823 URL: http://svn.gna.org/viewcvs/relax?rev=27823&view=rev Log: relax version 3.3.8. This is a minor bugfix release which allows the relax GUI to be used on screens with the low resolution of 1024x768 pixels. Added: tags/3.3.8

r27824 - /tags/3.3.8/version.py

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 09:24:16 2015 New Revision: 27824 URL: http://svn.gna.org/viewcvs/relax?rev=27824&view=rev Log: Updated the version number to 3.3.8. Modified: tags/3.3.8/version.py Modified: tags/3.3.8/version.py URL: http://svn.gna.org/viewcvs/relax/tags/3.3.8/version.py?r

r27825 - /tags/3.3.8/docs/relax.pdf

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 09:37:38 2015 New Revision: 27825 URL: http://svn.gna.org/viewcvs/relax?rev=27825&view=rev Log: Added the relax 3.3.8 PDF manual to the repository. Added: tags/3.3.8/docs/relax.pdf (with props) Added: tags/3.3.8/docs/relax.pdf URL: http://svn.gna.org/viewc

r27826 - /tags/3.3.8/docs/CHANGES

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 09:40:52 2015 New Revision: 27826 URL: http://svn.gna.org/viewcvs/relax?rev=27826&view=rev Log: Updated the CHANGES document for relax 3.3.8. Modified: tags/3.3.8/docs/CHANGES Modified: tags/3.3.8/docs/CHANGES URL: http://svn.gna.org/viewcvs/relax/tags/3.3.8

r27827 - /trunk/docs/CHANGES

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 09:41:52 2015 New Revision: 27827 URL: http://svn.gna.org/viewcvs/relax?rev=27827&view=rev Log: Backported the relax 3.3.8 CHANGES file changes to trunk. The command used was: svn merge -r27825:r27826 svn+ssh://bug...@svn.gna.org/svn/relax/tags/3.3.8 . Modified:

r27828 - /website/download.html

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 10:27:26 2015 New Revision: 27828 URL: http://svn.gna.org/viewcvs/relax?rev=27828&view=rev Log: Updated the http://www.nmr-relax.com/download.html webpage for the relax 3.3.8 release. Modified: website/download.html [This mail would be too long, it was short

r27829 - /website/manual/

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 10:36:33 2015 New Revision: 27829 URL: http://svn.gna.org/viewcvs/relax?rev=27829&view=rev Log: Updated the relax HTML manual at http://www.nmr-relax.com/manual/index.html to version 3.3.8. Modified: website/manual/A_warning_about_the_formatting.html webs

r27830 - /website/api/3.3/

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 11:00:13 2015 New Revision: 27830 URL: http://svn.gna.org/viewcvs/relax?rev=27830&view=rev Log: Updated the relax API documentation at http://www.nmr-relax.com/api/3.3/ to version 3.3.8. Modified: website/api/3.3/abc.ABCMeta-class.html website/api/3.3/aut

r27831 - /website/api/index.html

2015-04-02 Thread edward
Author: bugman Date: Thu Apr 2 11:02:16 2015 New Revision: 27831 URL: http://svn.gna.org/viewcvs/relax?rev=27831&view=rev Log: Updated the relax version number to 3.3.8 on the http://www.nmr-relax.com/api/index.html webpage. Modified: website/api/index.html Modified: website/api/index.htm

r27832 - in /website: ./ manual/

2015-05-13 Thread edward
Author: bugman Date: Wed May 13 11:44:43 2015 New Revision: 27832 URL: http://svn.gna.org/viewcvs/relax?rev=27832&view=rev Log: Redirects for the relax HTML manual at http://www.nmr-relax.com/manual/index.html. This restores some old links in the mailing list archives, as identified using the G

r27851 - /website/refs.html

2015-06-15 Thread edward
Author: bugman Date: Mon Jun 15 15:46:13 2015 New Revision: 27851 URL: http://svn.gna.org/viewcvs/relax?rev=27851&view=rev Log: Fixes for broken links to my PhD thesis. Modified: website/refs.html Modified: website/refs.html URL: http://svn.gna.org/viewcvs/relax/website/refs.html?rev=27851

r27853 - /website/head.html

2015-06-18 Thread edward
Author: bugman Date: Thu Jun 18 12:42:35 2015 New Revision: 27853 URL: http://svn.gna.org/viewcvs/relax?rev=27853&view=rev Log: Added 'NMR dynamics' as a meta keyword for all of http://www.nmr-relax.com/ . Modified: website/head.html Modified: website/head.html URL: http://svn.gna.org/view

r27854 - /trunk/test_suite/system_tests/scripts/n_state_model/absolute_T.py

2015-06-23 Thread edward
Author: bugman Date: Tue Jun 23 18:14:57 2015 New Revision: 27854 URL: http://svn.gna.org/viewcvs/relax?rev=27854&view=rev Log: Added Monte Carlo simulations to the N_state_model.test_absolute_T system test. This is to demonstrate a failure of the simulations in certain N-state model setups. M

r27855 - /trunk/test_suite/system_tests/scripts/n_state_model/absolute_T.py

2015-06-23 Thread edward
Author: bugman Date: Tue Jun 23 18:26:18 2015 New Revision: 27855 URL: http://svn.gna.org/viewcvs/relax?rev=27855&view=rev Log: Added a missing call to monte_carlo.initial_values in the N_state_model.test_absolute_T system test. This fixes the commit of r27854, showing that there is not a proble

r27856 - in /trunk/pipe_control: pcs.py rdc.py

2015-06-24 Thread edward
Author: bugman Date: Wed Jun 24 14:35:32 2015 New Revision: 27856 URL: http://svn.gna.org/viewcvs/relax?rev=27856&view=rev Log: Added Monte Carlo and Bootstrap simulation support for the RDC and PCS Q factor calculations. The pipe_control.rdc.q_factors() and pipe_control.pcs.q_factors() function

r27857 - in /trunk/specific_analyses/n_state_model: api.py optimisation.py

2015-06-24 Thread edward
yWed Jun 24 14:39:42 2015 @@ -1,6 +1,6 @@ ### # # -# Copyright (C) 2007-2014 Edward d'Auvergne #

r27858 - /trunk/pipe_control/rdc.py

2015-06-24 Thread edward
Author: bugman Date: Wed Jun 24 14:51:11 2015 New Revision: 27858 URL: http://svn.gna.org/viewcvs/relax?rev=27858&view=rev Log: Removed some accidentally committed debugging printouts. Modified: trunk/pipe_control/rdc.py Modified: trunk/pipe_control/rdc.py URL: http://svn.gna.org/viewcvs/r

r27859 - /trunk/specific_analyses/n_state_model/api.py

2015-06-25 Thread edward
Author: bugman Date: Thu Jun 25 12:52:26 2015 New Revision: 27859 URL: http://svn.gna.org/viewcvs/relax?rev=27859&view=rev Log: Silenced a warning in the N-state model optimisation if the verbosity is set to zero. This removes a repetitive warning from the Monte Carlo or Bootstrap simulations.

r27860 - /trunk/data_store/align_tensor.py

2015-06-25 Thread edward
Author: bugman Date: Thu Jun 25 16:00:59 2015 New Revision: 27860 URL: http://svn.gna.org/viewcvs/relax?rev=27860&view=rev Log: Huge speed up for the Monte Carlo simulations in the N-state model analyses. This speed up is also for Bootstrap simulations and the frame order analysis. The change a

r27861 - /trunk/lib/statistics.py

2015-06-26 Thread edward
015 @@ -1,6 +1,6 @@ ### # # -# Copyright (C) 2013 Edward d'Auvergne# +# Copyright (C) 2013-2015 Edward d'Auvergne # # Copyright

r27862 - /trunk/lib/statistics.py

2015-06-26 Thread edward
Author: bugman Date: Fri Jun 26 09:57:22 2015 New Revision: 27862 URL: http://svn.gna.org/viewcvs/relax?rev=27862&view=rev Log: Removed some rubbish text from the new lib.statistics.geometric_*() function docstrings. Modified: trunk/lib/statistics.py Modified: trunk/lib/statistics.py URL:

r27863 - /trunk/test_suite/unit_tests/_lib/__init__.py

2015-06-26 Thread edward
Author: bugman Date: Fri Jun 26 10:33:34 2015 New Revision: 27863 URL: http://svn.gna.org/viewcvs/relax?rev=27863&view=rev Log: Created a simple unit test for the new lib.statistics.geometric_mean() function. Modified: trunk/test_suite/unit_tests/_lib/__init__.py Modified: trunk/test_suite/

r27864 - /trunk/test_suite/unit_tests/_lib/test_statistics.py

2015-06-26 Thread edward
y (added) +++ trunk/test_suite/unit_tests/_lib/test_statistics.py Fri Jun 26 10:36:14 2015 @@ -0,0 +1,35 @@ +### +# # +# Copyright (C) 2007-2013 Edward d&

r27865 - /trunk/test_suite/unit_tests/_lib/test_statistics.py

2015-06-26 Thread edward
st_statistics.py (original) +++ trunk/test_suite/unit_tests/_lib/test_statistics.py Fri Jun 26 10:38:27 2015 @@ -1,6 +1,6 @@ ### # # -# Copyright (C)

r27867 - in /branches/frame_order_cleanup: ./ devel_scripts/memory_management/ docs/ gui/components/ gui/spin_viewer/ lib/ l...

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:01:36 2015 New Revision: 27867 URL: http://svn.gna.org/viewcvs/relax?rev=27867&view=rev Log: Merged revisions 27800-27805,27807,27816,27818-27820,27822,27827 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27800 | bugman | 2015-03-10

r27868 - in /branches/frame_order_cleanup: ./ auto_analyses/relax_disp_repeat_cpmg.py

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:02:51 2015 New Revision: 27868 URL: http://svn.gna.org/viewcvs/relax?rev=27868&view=rev Log: Merged revisions 27834-27840 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27834 | tlinnet | 2015-05-27 03:09:35 +0200 (Wed, 27 May 2015) |

r27869 - in /branches/frame_order_cleanup: ./ multi/processor.py pipe_control/minimise.py user_functions/minimisation.py

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:03:20 2015 New Revision: 27869 URL: http://svn.gna.org/viewcvs/relax?rev=27869&view=rev Log: Merged revisions 27841-27843 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27841 | tlinnet | 2015-05-27 03:09:50 +0200 (Wed, 27 May 2015) |

r27870 - in /branches/frame_order_cleanup: ./ multi/processor.py

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:12:18 2015 New Revision: 27870 URL: http://svn.gna.org/viewcvs/relax?rev=27870&view=rev Log: Merged revisions 27844-27845 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27844 | tlinnet | 2015-05-27 03:09:57 +0200 (Wed, 27 May 2015) |

r27872 - in /branches/frame_order_cleanup: ./ auto_analyses/relax_disp_repeat_cpmg.py

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:13:04 2015 New Revision: 27872 URL: http://svn.gna.org/viewcvs/relax?rev=27872&view=rev Log: Merged revisions 27847 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27847 | tlinnet | 2015-05-29 18:32:43 +0200 (Fri, 29 May 2015) | 5 lin

r27871 - in /branches/frame_order_cleanup: ./ test_suite/system_tests/relax_disp.py

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:12:45 2015 New Revision: 27871 URL: http://svn.gna.org/viewcvs/relax?rev=27871&view=rev Log: Merged revisions 27846 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27846 | tlinnet | 2015-05-28 18:15:48 +0200 (Thu, 28 May 2015) | 3 lin

r27873 - in /branches/frame_order_cleanup: ./ auto_analyses/ multi/ pipe_control/ user_functions/

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:13:22 2015 New Revision: 27873 URL: http://svn.gna.org/viewcvs/relax?rev=27873&view=rev Log: Merged revisions 27848 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27848 | tlinnet | 2015-06-11 13:15:54 +0200 (Thu, 11 Jun 2015) | 45 li

r27874 - in /branches/frame_order_cleanup: ./ pipe_control/mol_res_spin.py test_suite/unit_tests/spin_testing_base.py

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:14:17 2015 New Revision: 27874 URL: http://svn.gna.org/viewcvs/relax?rev=27874&view=rev Log: Merged revisions 27849-27850 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27849 | tlinnet | 2015-06-13 14:00:39 +0200 (Sat, 13 Jun 2015) |

r27875 - in /branches/frame_order_cleanup: ./ test_suite/shared_data/dispersion/bug_3333_monte_carlo_mean/

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:14:56 2015 New Revision: 27875 URL: http://svn.gna.org/viewcvs/relax?rev=27875&view=rev Log: Merged revisions 27852 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27852 | tlinnet | 2015-06-15 23:12:52 +0200 (Mon, 15 Jun 2015) | 9 lin

r27876 - in /branches/frame_order_cleanup: ./ data_store/ lib/ pipe_control/ specific_analyses/n_state_model/ test_suite/sys...

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:17:21 2015 New Revision: 27876 URL: http://svn.gna.org/viewcvs/relax?rev=27876&view=rev Log: Merged revisions 27854-27865 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27854 | bugman | 2015-06-23 18:14:57 +0200 (Tue, 23 Jun 2015) |

r27877 - in /branches/frame_order_cleanup: ./ auto_analyses/relax_disp_repeat_cpmg.py

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:17:48 2015 New Revision: 27877 URL: http://svn.gna.org/viewcvs/relax?rev=27877&view=rev Log: Merged revisions 27866 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27866 | tlinnet | 2015-07-23 14:08:17 +0200 (Thu, 23 Jul 2015) | 3 lin

r27878 - in /branches/frame_order_cleanup/docs/latex: frame_order.tex relax.tex

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 14:30:22 2015 New Revision: 27878 URL: http://svn.gna.org/viewcvs/relax?rev=27878&view=rev Log: Created a new skeleton chapter in the relax manual for the frame order analysis. Added: branches/frame_order_cleanup/docs/latex/frame_order.tex Modified: branch

r27879 - in /branches/frame_order_cleanup/docs/latex: ./ images/

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 15:10:04 2015 New Revision: 27879 URL: http://svn.gna.org/viewcvs/relax?rev=27879&view=rev Log: Added a theory section to the new frame order chapter. This is taken from an in-preparation supplement. Added: branches/frame_order_cleanup/docs/latex/images/doubl

r27880 - in /branches/frame_order_cleanup/docs/latex: frame_order.tex frame_order_theory.tex

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 15:15:19 2015 New Revision: 27880 URL: http://svn.gna.org/viewcvs/relax?rev=27880&view=rev Log: Rearrangement of the frame order chapter in the manual. The theory section has been spun out into its own frame_order_theory.tex LaTeX file for better organisation. A

r27881 - /branches/frame_order_cleanup/docs/latex/relax.tex

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 15:26:00 2015 New Revision: 27881 URL: http://svn.gna.org/viewcvs/relax?rev=27881&view=rev Log: Fix for the previous commit (r27880). Most chapters had been commented out and accidentally committed. Modified: branches/frame_order_cleanup/docs/latex/relax.tex

r27882 - in /branches/frame_order_cleanup/docs/latex: ./ frame_order/ images/ images/frame_order_matrix/

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 20:15:46 2015 New Revision: 27882 URL: http://svn.gna.org/viewcvs/relax?rev=27882&view=rev Log: Added two more sections to the frame order chapter of the manual. This includes a frame order modelling section and PCS numerical integration section. Both are from a

r27883 - /branches/frame_order_cleanup/docs/latex/bibliography.bib

2015-09-25 Thread edward
Author: bugman Date: Fri Sep 25 20:26:01 2015 New Revision: 27883 URL: http://svn.gna.org/viewcvs/relax?rev=27883&view=rev Log: Added a DOI and ISBN number to the bibliography. Modified: branches/frame_order_cleanup/docs/latex/bibliography.bib Modified: branches/frame_order_cleanup/docs/lat

r27884 - in /branches/frame_order_cleanup/docs/latex: frame_order.tex frame_order/theory.tex frame_order_theory.tex

2015-09-28 Thread edward
Author: bugman Date: Mon Sep 28 18:13:54 2015 New Revision: 27884 URL: http://svn.gna.org/viewcvs/relax?rev=27884&view=rev Log: Moved the frame_order_theory.tex LaTeX file into the frame_order directory. Added: branches/frame_order_cleanup/docs/latex/frame_order/theory.tex - copied unc

r27885 - in /branches/frame_order_cleanup/docs/latex: frame_order/modelling.tex frame_order/models.tex relax.tex

2015-09-28 Thread edward
Author: bugman Date: Mon Sep 28 18:37:31 2015 New Revision: 27885 URL: http://svn.gna.org/viewcvs/relax?rev=27885&view=rev Log: Shifted the frame order model derivations into their own 'Advanced topics' chapter. Added: branches/frame_order_cleanup/docs/latex/frame_order/models.tex - c

r27886 - in /branches/frame_order_cleanup/docs/latex/frame_order: modelling.tex models.tex

2015-09-28 Thread edward
Author: bugman Date: Mon Sep 28 19:05:02 2015 New Revision: 27886 URL: http://svn.gna.org/viewcvs/relax?rev=27886&view=rev Log: Cross-referencing fix. Modified: branches/frame_order_cleanup/docs/latex/frame_order/modelling.tex branches/frame_order_cleanup/docs/latex/frame_order/models.te

r27887 - /branches/frame_order_cleanup/sample_scripts/frame_order/

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 13:51:04 2015 New Revision: 27887 URL: http://svn.gna.org/viewcvs/relax?rev=27887&view=rev Log: Added the frame order sample scripts used in the CaM-IQ analysis. Added: branches/frame_order_cleanup/sample_scripts/frame_order/count_sobol_points.py branches

r27888 - in /branches/frame_order_cleanup/docs/latex: frame_order.tex frame_order/introduction.tex

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 16:02:20 2015 New Revision: 27888 URL: http://svn.gna.org/viewcvs/relax?rev=27888&view=rev Log: Added an introduction for the frame order chapter of the manual. Added: branches/frame_order_cleanup/docs/latex/frame_order/introduction.tex Modified: branches/

r27889 - in /branches/frame_order_cleanup/docs/latex: frame_order.tex frame_order/data_analysis.tex

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 16:15:49 2015 New Revision: 27889 URL: http://svn.gna.org/viewcvs/relax?rev=27889&view=rev Log: Added a 'Data analysis' section to the frame order chapter of the manual. This includes the N-state and frame order analysis scripts required to perform a full analysis

r27890 - in /branches/frame_order_cleanup/docs/latex: frame_order/ images/

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 17:43:04 2015 New Revision: 27890 URL: http://svn.gna.org/viewcvs/relax?rev=27890&view=rev Log: Editing of the data analysis section of the frame order chapter of the manual. A PCS structural error figure has been added, all the text improved, and the scripts made

r27891 - /branches/frame_order_cleanup/docs/latex/frame_order/data_analysis.tex

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 18:09:20 2015 New Revision: 27891 URL: http://svn.gna.org/viewcvs/relax?rev=27891&view=rev Log: Added a section to the end of the frame order chapter about the long computation times. Modified: branches/frame_order_cleanup/docs/latex/frame_order/data_analysis

r27892 - /branches/frame_order_cleanup/scons/manuals.py

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 18:17:13 2015 New Revision: 27892 URL: http://svn.gna.org/viewcvs/relax?rev=27892&view=rev Log: The 'scons clean' target now removes all LaTeX *.aux files. The docs/latex/frame_order/ directory is now also being checked for *.aux files. Modified: branches/fra

r27896 - /branches/frame_order_cleanup/docs/latex/frame_order/modelling.tex

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 18:43:07 2015 New Revision: 27896 URL: http://svn.gna.org/viewcvs/relax?rev=27896&view=rev Log: Reference fix in the frame order chapter of the manual. Modified: branches/frame_order_cleanup/docs/latex/frame_order/modelling.tex Modified: branches/frame_order_

r27895 - /branches/frame_order_cleanup/docs/latex/frame_order/

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 18:26:10 2015 New Revision: 27895 URL: http://svn.gna.org/viewcvs/relax?rev=27895&view=rev Log: Removed lots of useless comments about book references. Modified: branches/frame_order_cleanup/docs/latex/frame_order/modelling.tex branches/frame_order_cleanup

r27893 - /branches/frame_order_cleanup/sample_scripts/frame_order/full_analysis.py

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 18:17:47 2015 New Revision: 27893 URL: http://svn.gna.org/viewcvs/relax?rev=27893&view=rev Log: Trailing whitespace removal in the full_analysis.py frame order sample script. Modified: branches/frame_order_cleanup/sample_scripts/frame_order/full_analysis.py M

r27894 - in /branches/frame_order_cleanup/docs/latex/frame_order: modelling.tex models.tex pcs_numerical_integration.tex

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 18:23:52 2015 New Revision: 27894 URL: http://svn.gna.org/viewcvs/relax?rev=27894&view=rev Log: Removed many unnecessary references to relax. Modified: branches/frame_order_cleanup/docs/latex/frame_order/modelling.tex branches/frame_order_cleanup/docs/late

r27897 - in /branches/frame_order_cleanup/docs/latex: frame_order/models.tex images/pec_diag.eps images/pec_y.eps

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 19:00:06 2015 New Revision: 27897 URL: http://svn.gna.org/viewcvs/relax?rev=27897&view=rev Log: Added some images missing from the frame order chapter of the manual. Added: branches/frame_order_cleanup/docs/latex/images/pec_diag.eps branches/frame_order_cl

r27898 - /branches/frame_order_cleanup/docs/latex/frame_order/theory.tex

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 19:02:32 2015 New Revision: 27898 URL: http://svn.gna.org/viewcvs/relax?rev=27898&view=rev Log: Avoided a doubly defined label in the manual. Modified: branches/frame_order_cleanup/docs/latex/frame_order/theory.tex Modified: branches/frame_order_cleanup/docs/

r27899 - /branches/frame_order_cleanup/docs/latex/frame_order/models.tex

2015-09-29 Thread edward
Author: bugman Date: Tue Sep 29 19:06:50 2015 New Revision: 27899 URL: http://svn.gna.org/viewcvs/relax?rev=27899&view=rev Log: Removed some duplicated text in the frame order models chapter of the manual. This is duplicated from the frame order analysis chapter. Modified: branches/frame_or

r27900 - /tags/3.3.9/

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 11:37:42 2015 New Revision: 27900 URL: http://svn.gna.org/viewcvs/relax?rev=27900&view=rev Log: relax version 3.3.9. This is a minor feature release with improvements to the automatic relaxation dispersion protocol for repeated CPMG data, support for Monte Carlo o

r27901 - /tags/3.3.9/version.py

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 11:41:41 2015 New Revision: 27901 URL: http://svn.gna.org/viewcvs/relax?rev=27901&view=rev Log: Updated the version number to relax 3.3.9. Modified: tags/3.3.9/version.py Modified: tags/3.3.9/version.py URL: http://svn.gna.org/viewcvs/relax/tags/3.3.9/versio

r27902 - /tags/3.3.9/docs/relax.pdf

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 11:54:50 2015 New Revision: 27902 URL: http://svn.gna.org/viewcvs/relax?rev=27902&view=rev Log: Added the relax 3.3.9 manual to the repository. Added: tags/3.3.9/docs/relax.pdf (with props) Added: tags/3.3.9/docs/relax.pdf URL: http://svn.gna.org/viewcvs/r

r27903 - /tags/3.3.9/docs/CHANGES

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 12:07:24 2015 New Revision: 27903 URL: http://svn.gna.org/viewcvs/relax?rev=27903&view=rev Log: Updated the CHANGES file for relax 3.3.9. Modified: tags/3.3.9/docs/CHANGES Modified: tags/3.3.9/docs/CHANGES URL: http://svn.gna.org/viewcvs/relax/tags/3.3.9/doc

r27904 - /trunk/docs/CHANGES

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 12:08:12 2015 New Revision: 27904 URL: http://svn.gna.org/viewcvs/relax?rev=27904&view=rev Log: Backported the relax 3.3.9 CHANGES file changes to trunk. The command used was: svn merge -r27902:27903 svn+ssh://bug...@svn.gna.org/svn/relax/tags/3.3.9 . Modified:

r27905 - /website/manual/

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 14:04:08 2015 New Revision: 27905 URL: http://svn.gna.org/viewcvs/relax?rev=27905&view=rev Log: Updated the relax HTML manual at http://www.nmr-relax.com/manual/index.html to version 3.3.9. Modified: website/manual/A_warning_about_the_formatting.html webs

r27906 - /trunk/docs/devel/epydoc_graphvis_fix.patch

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 14:42:40 2015 New Revision: 27906 URL: http://svn.gna.org/viewcvs/relax?rev=27906&view=rev Log: Added a patch file for fixing Epydoc version 3.0.1. This is needed to allow the dot graph files names to be unique (by no longer truncating to 30 characters), and to al

r27907 - /trunk/docs/devel/Release_Checklist

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 14:43:40 2015 New Revision: 27907 URL: http://svn.gna.org/viewcvs/relax?rev=27907&view=rev Log: Improvements for the release checklist document. The backporting of the CHANGES file to trunk is now more obvious, and instructions for fixing Epydoc have been added.

r27908 - /website/api/3.3/

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 14:52:18 2015 New Revision: 27908 URL: http://svn.gna.org/viewcvs/relax?rev=27908&view=rev Log: Updated the relax API documentation at http://www.nmr-relax.com/api/3.3/ to version 3.3.9. Added: website/api/3.3/test_suite.unit_tests._lib.test_statistics-module

r27909 - /website/download.html

2015-09-30 Thread edward
Author: bugman Date: Wed Sep 30 19:11:57 2015 New Revision: 27909 URL: http://svn.gna.org/viewcvs/relax?rev=27909&view=rev Log: Updated the http://www.nmr-relax.com/download.html webpage for the relax 3.3.9 release. Modified: website/download.html [This mail would be too long, it was short

r27910 - /trunk/docs/devel/Release_Checklist

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 14:55:29 2015 New Revision: 27910 URL: http://svn.gna.org/viewcvs/relax?rev=27910&view=rev Log: Clean up of some of the release instructions (for using vim). Modified: trunk/docs/devel/Release_Checklist Modified: trunk/docs/devel/Release_Checklist URL: http:

r27911 - in /branches/frame_order_cleanup: ./ docs/CHANGES docs/devel/Release_Checklist docs/devel/epydoc_graphvis_fix.patch

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 14:57:21 2015 New Revision: 27911 URL: http://svn.gna.org/viewcvs/relax?rev=27911&view=rev Log: Merged revisions 27904,27906-27907,27910 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk r27904 | bugman | 2015-09-30 12:08:12 +0200 (Wed, 30

r27912 - /branches/frame_order_cleanup/specific_analyses/frame_order/optimisation.py

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 14:59:38 2015 New Revision: 27912 URL: http://svn.gna.org/viewcvs/relax?rev=27912&view=rev Log: Indentation fix for allowing the API documentation to be properly compiled. Modified: branches/frame_order_cleanup/specific_analyses/frame_order/optimisation.py Mo

r27913 - /trunk/

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 16:04:25 2015 New Revision: 27913 URL: http://svn.gna.org/viewcvs/relax?rev=27913&view=rev Log: Initialized merge tracking via "svnmerge" with revisions "1-23195" from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup Modified: trunk/ (prop

r27914 - in /trunk: ./ auto_analyses/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/ test_suite/shar...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 18:47:48 2015 New Revision: 27914 URL: http://svn.gna.org/viewcvs/relax?rev=27914&view=rev Log: Merged revisions 23197 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23197 | bugman | 2014-05-16 10:45:40 +0200 (Fri

r27915 - in /trunk: ./ target_functions/frame_order.py

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 18:50:35 2015 New Revision: 27915 URL: http://svn.gna.org/viewcvs/relax?rev=27915&view=rev Log: Merged revisions 23198 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23198 | bugman | 2014-05-16 13:44:31 +0200 (Fri

r27916 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 19:17:15 2015 New Revision: 27916 URL: http://svn.gna.org/viewcvs/relax?rev=27916&view=rev Log: Merged revisions 23199-23205 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23199 | bugman | 2014-05-16 14:12:07 +020

r27917 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/ test_suite/shared_data/frame_o...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 19:49:46 2015 New Revision: 27917 URL: http://svn.gna.org/viewcvs/relax?rev=27917&view=rev Log: Merged revisions 23208-23211 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23208 | bugman | 2014-05-16 16:36:45 +020

r27918 - in /trunk: ./ auto_analyses/ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/ca...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 20:08:08 2015 New Revision: 27918 URL: http://svn.gna.org/viewcvs/relax?rev=27918&view=rev Log: Merged revisions 23241-23245,23251-23253,23256-23258,23280-23283,23309,23321-23322 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanu

r27919 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/ test_suite/sh...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 20:17:10 2015 New Revision: 27919 URL: http://svn.gna.org/viewcvs/relax?rev=27919&view=rev Log: Merged revisions 23326,23347,23354-23355,23387-23388,23391 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23326 | bug

r27920 - in /trunk: ./ lib/frame_order/ target_functions/ test_suite/shared_data/frame_order/cam/free_rotor2/ test_suite/sha...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 20:33:47 2015 New Revision: 27920 URL: http://svn.gna.org/viewcvs/relax?rev=27920&view=rev Log: Merged revisions 23394-23407,23411,23421-23424 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23394 | bugman | 2014-0

r27921 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 20:41:31 2015 New Revision: 27921 URL: http://svn.gna.org/viewcvs/relax?rev=27921&view=rev Log: Merged revisions 23427-23430,23466-23467 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23427 | bugman | 2014-05-26 1

r27922 - in /trunk: ./ lib/frame_order/pseudo_ellipse.py

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 20:44:41 2015 New Revision: 27922 URL: http://svn.gna.org/viewcvs/relax?rev=27922&view=rev Log: Merged revisions 23544 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23544 | bugman | 2014-05-28 17:47:55 +0200 (Wed

r27923 - in /trunk: ./ test_suite/shared_data/frame_order/cam/iso_cone/ test_suite/shared_data/frame_order/cam/pseudo_ellips...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 20:59:30 2015 New Revision: 27923 URL: http://svn.gna.org/viewcvs/relax?rev=27923&view=rev Log: Merged revisions 23611 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23611 | bugman | 2014-05-30 11:48:40 +0200 (Fri

r27924 - in /trunk: ./ test_suite/shared_data/frame_order/cam/rigid/

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:00:39 2015 New Revision: 27924 URL: http://svn.gna.org/viewcvs/relax?rev=27924&view=rev Log: Merged revisions 23612 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23612 | bugman | 2014-05-30 12:49:16 +0200 (Fri

r27925 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/rigid/rotor_an...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:08:55 2015 New Revision: 27925 URL: http://svn.gna.org/viewcvs/relax?rev=27925&view=rev Log: Merged revisions 23613-23615 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23613 | bugman | 2014-06-03 08:53:25 +020

r27926 - in /trunk: ./ test_suite/shared_data/frame_order/cam/free_rotor/ test_suite/shared_data/frame_order/cam/free_rotor2...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:15:16 2015 New Revision: 27926 URL: http://svn.gna.org/viewcvs/relax?rev=27926&view=rev Log: Merged revisions 23616-23622 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23616 | bugman | 2014-06-03 11:16:38 +020

r27927 - in /trunk: ./ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/cam/free_rotor/ t...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:17:49 2015 New Revision: 27927 URL: http://svn.gna.org/viewcvs/relax?rev=27927&view=rev Log: Merged revisions 23624-23627 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23624 | bugman | 2014-06-03 18:09:00 +020

r27928 - in /trunk: ./ auto_analyses/ pipe_control/ test_suite/system_tests/ test_suite/system_tests/scripts/frame_order/cam/

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:19:08 2015 New Revision: 27928 URL: http://svn.gna.org/viewcvs/relax?rev=27928&view=rev Log: Merged revisions 23632-23635 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23632 | bugman | 2014-06-04 10:56:18 +020

r27929 - in /trunk: ./ auto_analyses/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/ test_suite/shar...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:23:53 2015 New Revision: 27929 URL: http://svn.gna.org/viewcvs/relax?rev=27929&view=rev Log: Merged revisions 23641-23646 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23641 | bugman | 2014-06-04 19:21:24 +020

r27930 - in /trunk: ./ test_suite/shared_data/frame_order/cam/free_rotor/ test_suite/shared_data/frame_order/cam/free_rotor2...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:25:06 2015 New Revision: 27930 URL: http://svn.gna.org/viewcvs/relax?rev=27930&view=rev Log: Merged revisions 23650,23668-23673 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23650 | bugman | 2014-06-05 13:15:0

r27931 - in /trunk: ./ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/cam/free_rotor/ t...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:25:47 2015 New Revision: 27931 URL: http://svn.gna.org/viewcvs/relax?rev=27931&view=rev Log: Merged revisions 23682-23687,23690-23691,23709 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23682 | bugman | 2014-0

r27932 - in /trunk: ./ pipe_control/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/ test_suite/share...

2015-10-01 Thread edward
Author: bugman Date: Thu Oct 1 21:27:37 2015 New Revision: 27932 URL: http://svn.gna.org/viewcvs/relax?rev=27932&view=rev Log: Merged revisions 23713-23714,23717,23771-23773,23778,23783 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23713 | bug

r27933 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/ test_suite/shared_data/frame_o...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 09:18:46 2015 New Revision: 27933 URL: http://svn.gna.org/viewcvs/relax?rev=27933&view=rev Log: Merged revisions 23807-23812 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23807 | bugman | 2014-06-11 08:07:03 +020

r27934 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 09:29:12 2015 New Revision: 27934 URL: http://svn.gna.org/viewcvs/relax?rev=27934&view=rev Log: Merged revisions 23856-23863,23878-23879,23883-23887 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23856 | bugman |

r27935 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 10:40:33 2015 New Revision: 27935 URL: http://svn.gna.org/viewcvs/relax?rev=27935&view=rev Log: Merged revisions 23935-23936,23943,23947-23948,23969-23983 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23935 | bug

r27936 - in /trunk: ./ lib/frame_order/ target_functions/ test_suite/shared_data/frame_order/cam/ test_suite/shared_data/fra...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 10:49:41 2015 New Revision: 27936 URL: http://svn.gna.org/viewcvs/relax?rev=27936&view=rev Log: Merged revisions 23985,24015-24017,24090,24279,24284,24309-24314,24316-24318,24321-24322 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_

r27937 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/double_rotor_l...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:18:36 2015 New Revision: 27937 URL: http://svn.gna.org/viewcvs/relax?rev=27937&view=rev Log: Merged revisions 24327-24334,24344-24346 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24327 | bugman | 2014-06-26 1

r27938 - in /trunk: ./ lib/structure/internal/ lib/structure/represent/ pipe_control/ pipe_control/structure/ specific_analy...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:30:10 2015 New Revision: 27938 URL: http://svn.gna.org/viewcvs/relax?rev=27938&view=rev Log: Merged revisions 24352,24358,24366-24379,24385,24397,24402-24406,24409-24411 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup

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