[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50854138 @witgo Could you update the pom to exclude `commons-math3` from dependencies? I tried at local and LBFGS works well. It should be safe to remove `commons-math3`. For

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread witgo
Github user witgo commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50855187 @mengxr done --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread mengxr
Github user mengxr commented on a diff in the pull request: https://github.com/apache/spark/pull/940#discussion_r15684374 --- Diff: mllib/pom.xml --- @@ -60,6 +60,14 @@ groupIdjunit/groupId artifactIdjunit/artifactId /exclusion +

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread witgo
Github user witgo commented on a diff in the pull request: https://github.com/apache/spark/pull/940#discussion_r15684437 --- Diff: mllib/pom.xml --- @@ -60,6 +60,14 @@ groupIdjunit/groupId artifactIdjunit/artifactId /exclusion +

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50859290 QA results for PR 940:br- This patch FAILED unit tests.br- This patch merges cleanlybr- This patch adds no public classesbrbrFor more information see test

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread witgo
Github user witgo commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50860276 Jenkins, retest this please. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50860395 QA tests have started for PR 940. This patch merges cleanly. brView progress: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/17666/consoleFull ---

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50864392 QA results for PR 940:br- This patch PASSES unit tests.br- This patch merges cleanlybr- This patch adds no public classesbrbrFor more information see test

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50892988 LGTM. Merged into master. Note that Jenkins didn't tell the full story because we have `commons-math3` in the test scope. I built the assembly jar and verified LBFGS work.

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread avati
Github user avati commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50894442 @mengxr Based on the dependency graph, I am guessing we will now have jar hell problem with scalalogging-slf4j 2.1.2 (needed by breeze 0.8.1) vs 1.0.1 (used by sql/).

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread srowen
Github user srowen commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50896659 Is that a problem? just update `sql/catalyst` to use 2.1.2? Do we know if that would be any problem? @witgo has a PR to standardize use of scalalogging-slf4j anyway

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50896710 Ah, I see. Tests were against individual build instead of the assembly jar. We should have integration tests in the future. --- If your project is set up for it, you can

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread avati
Github user avati commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50897230 Yes, either #1701 or #1369. We are already broken till they are committed. On Fri, Aug 1, 2014 at 8:19 AM, Xiangrui Meng notificati...@github.com wrote:

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread asfgit
Github user asfgit closed the pull request at: https://github.com/apache/spark/pull/940 --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread avati
Github user avati commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50899294 I think Jenkins should be fine but the assembly jar is broken. Is it right? I think so, just like commons-math3 --- If your project is set up for it, you

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread witgo
Github user witgo commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50906124 How do we resolve this issue? --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50908990 I reverted the change in #1718 and asked @marmbrus to take look at the dependency issues caused by scala-logging. --- If your project is set up for it, you can reply to

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread srowen
Github user srowen commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50909587 I think @witgo's PR strongly suggests it's OK to upgrade to 2.1.2? --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-08-01 Thread avati
Github user avati commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50910905 I reverted the change in #1718 https://github.com/apache/spark/pull/1718 and asked @marmbrus https://github.com/marmbrus to take look at the dependency issues

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-31 Thread avati
Github user avati commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50849972 @mengxr looking at the dependency graphs of breeze 0.7 and 0.8.1, it appears that both the versions are depending on commons-math3:3.2. If hadoop 2.3 and 2.4 depend on

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-31 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50850308 Yes, it is already a problem with breeze 0.7. But we didn't realized that hadoop 2.3 depends on commons-math3 in the Spark v1.0 release. If there is a way to avoid

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-31 Thread avati
Github user avati commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50850441 Yes, it is already a problem with breeze 0.7. But we didn't realized that hadoop 2.3 depends on commons-math3 in the Spark v1.0 release. If there is a way to avoid

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-31 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50850626 But is it needed for the v1.1 release? Spark v1.1 doesn't support Scala 2.11. --- If your project is set up for it, you can reply to this email and have your reply appear

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-31 Thread avati
Github user avati commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50850842 But is it needed for the v1.1 release? Spark v1.1 doesn't support Scala 2.11. Not, I guess. I din't realize Spark 1.1 was not yet release branched. I

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-31 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50851243 That sounds good to me but I'm not familiar with the tasks related to Scala 2.11. Please run the discussion on https://issues.apache.org/jira/browse/SPARK-1812 --- If

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-28 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50303013 @witgo Thanks for checking the dependencies on the JIRA page! I list the dependency graph here so other people can see the difference easily. I think we need to figure out

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-28 Thread dlwh
Github user dlwh commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50310077 Release Plans implies that there is a plan. :-). My general policy is to cut a release whenever someone asks (or within a couple of weeks of that). We've done a bunch of

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-28 Thread marmbrus
Github user marmbrus commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50369429 David is right that quasiquotes are just a compile time dependency and are not needed at runtime. Also, we will be pulling them in for codegen in Spark SQL, so there is

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-28 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50379548 @dlwh Thanks for the quick reply! The `commons-math3` problem is not which version to use but how to match the version hadoop depends on. We can switch to 3.1.1 to match

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50291749 QA tests have started for PR 940. This patch DID NOT merge cleanly! brView progress: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/17265/consoleFull

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50291855 @witgo Could you merge the latest master? Thanks! --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread witgo
Github user witgo commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50293501 @mengxr Done --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50293521 QA tests have started for PR 940. This patch merges cleanly. brView progress: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/17268/consoleFull ---

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50295014 QA results for PR 940:br- This patch FAILED unit tests.br- This patch merges cleanlybr- This patch adds no public classesbrbrFor more information see test

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread witgo
Github user witgo commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50297230 Jenkins, retest this please. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50297424 QA tests have started for PR 940. This patch merges cleanly. brView progress: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/17271/consoleFull ---

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-27 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-50299031 QA results for PR 940:br- This patch PASSES unit tests.br- This patch merges cleanlybr- This patch adds no public classesbrbrFor more information see test

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-21 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-49578863 Jenkins, retest this please. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-07-19 Thread SparkQA
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-49508061 QA tests have started for PR 940. This patch merges cleanly. brView progress: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/16848/consoleFull ---

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-06-19 Thread mengxr
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-46529144 @nevillelyh Is there a JIRA for it? Is it fixed in 0.8.1? --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well.

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-06-19 Thread nevillelyh
Github user nevillelyh commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-46575215 @mengxr https://issues.apache.org/jira/browse/SPARK-2200 --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-06-18 Thread nevillelyh
Github user nevillelyh commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-46521234 We just hit a bug when DenseVector in 0.7 triggers StackOverflowError in KryoSerializer. --- If your project is set up for it, you can reply to this email and have

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-06-02 Thread witgo
Github user witgo commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-44911857 @markhamstra , `breeze 0.7 ` does not support `scala 2.11` . --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as

[GitHub] spark pull request: [SPARK-1997] update breeze to version 0.8.1

2014-06-02 Thread markhamstra
Github user markhamstra commented on the pull request: https://github.com/apache/spark/pull/940#issuecomment-44914945 Neither does spark 1.0.0. We've offered no guarantee that any spark 1.x will work with scala 2.11. If it turns out that we can't cross-compile for scala 2.10