Re: [sage-devel] 3d graphics with jsmol in version 3.9 broken

2019-11-07 Thread kcrisman
I can confirm this problem in sagenb on Safari, ONLY with the `viewer='jmol'` option in 9.0.beta4 (default renders normally in threejs). On the other hand, in Jupyter, I didn't even get the little circle that one usually clicked to make the jmol live, but the right-click menu was there (thoug

Re: [sage-devel] Re: Switch to Python 3 by default

2019-11-07 Thread kcrisman
On Tuesday, November 5, 2019 at 7:33:07 AM UTC-5, Eric Gourgoulhon wrote: > > Le mardi 5 novembre 2019 11:34:55 UTC+1, Salvatore Stella a écrit : >> >> On a side note: is jmol going to be replaced? If so, should we just >> ignore >> the issue? >> >> > Jmol has been replaced by three.js as Sage

[sage-devel] Re: Package installation/uninstallation confusion

2019-11-07 Thread Simon King
Hi Dima, On 2019-11-06, Dima Pasechnik wrote: > if you look at its spkg-install, you'd see that shd_install is not > used at some place, instead > > make install > > is done, something that won't write any JSON files, IMHO... Good that I leave comments in my code... The comment says that I used

[sage-devel] Re: Package installation/uninstallation confusion

2019-11-07 Thread John H Palmieri
These shell functions are defined and documented in SAGE_ROOT/build/bin/sage-dist-helpers. In my opinion they should also be documented in the developer's guide, but they don't seem to be. On Thursday, November 7, 2019 at 6:35:05 AM UTC-8, Simon King wrote: > > Hi Dima, > > On 2019-11-06, Dima

[sage-devel] Re: Package installation/uninstallation confusion

2019-11-07 Thread Simon King
Hi John, thank you! So, I'll try sdh_make_install (sdh_install just copies some files), keep using sdh_pip_install, and check what jason file results. Best regards, Simon On 2019-11-07, John H Palmieri wrote: > These shell functions are defined and documented in > SAGE_ROOT/build/bin/sage-dis

[sage-devel] Re: Package installation/uninstallation confusion

2019-11-07 Thread Simon King
Hi Dima, On 2019-11-06, Dima Pasechnik wrote: > sdh_install installs a json file into > SAGE_LOCAL/var/lib/sage/installed/ > which are then used by unistallaller > ... > I guess sdh_pip_install does not do this, I don't know. No, I just checked: Those files of p_group_cohomology that got install

Re: [sage-devel] Linux install fails

2019-11-07 Thread Dima Pasechnik
ImportError: /home/tengely/software/sage-8.9/local/lib/liblinbox.so.0: undefined symbol: GOMP_loop_ull_maybe_nonmonotonic_runtime_next something went wrong with installing linbox. please post the relevant log. On Thu, 7 Nov 2019, 21:01 Sz Tengely, wrote: > Hi, > > I tried to install SageMat

Re: [sage-devel] Linux install fails

2019-11-07 Thread Sz Tengely
The log file is attached. On Thursday, November 7, 2019 at 10:08:51 PM UTC+1, Dima Pasechnik wrote: > > ImportError: /home/tengely/software/sage-8.9/local/lib/liblinbox.so.0: > undefined symbol: GOMP_loop_ull_maybe_nonmonotonic_runtime_next > > > something went wrong with installing linbox. > >

Re: [sage-devel] Linux install fails

2019-11-07 Thread Dima Pasechnik
this seems to be related to OpenMP. are you doing anything special related to this? On Thu, 7 Nov 2019, 21:41 Sz Tengely, wrote: > The log file is attached. > > > On Thursday, November 7, 2019 at 10:08:51 PM UTC+1, Dima Pasechnik wrote: >> >> ImportError: /home/tengely/software/sage-8.9/local/

Re: [sage-devel] Linux install fails

2019-11-07 Thread Sz Tengely
install.log contains the following: [sagenb-1.1.2] Exception occurred: [sagenb-1.1.2] File "sage/misc/lazy_import.pyx", line 218, in sage.misc.lazy_i mport.LazyImport._get_object (build/cythonized/sage/misc/lazy_import.c:2502) [sagenb-1.1.2] raise RuntimeError(f"resolving lazy import {self.

Re: [sage-devel] Linux install fails

2019-11-07 Thread Dima Pasechnik
sagenb build error is a red herring here. the problem is that Sage, needed to build sagenb, does not start. On Thu, 7 Nov 2019, 21:51 Sz Tengely, wrote: > install.log contains the following: > > [sagenb-1.1.2] Exception occurred: > [sagenb-1.1.2] File "sage/misc/lazy_import.pyx", line 218, i

Re: [sage-devel] Linux install fails

2019-11-07 Thread Isuru Fernando
What does ldd /home/tengely/software/sage-8.9/local/lib/liblinbox.so.0 give you? Looks like libgomp used at runtime is older than what is at build time. Isuru On Thu, Nov 7, 2019 at 4:07 PM Dima Pasechnik wrote: > sagenb build error is a red herring here. > > the problem is that Sage, needed

Re: [sage-devel] Linux install fails

2019-11-07 Thread Sz Tengely
I have a working binary version of SageMath, however I would like to install a few optional packages via sage -i. That is the reason I go for this method. Now I found an old post https://sage-release.narkive.com/Cad5BdS6/sage-8-5-beta3-released in which a similar issue is mentioned (problem wit

Re: [sage-devel] Linux install fails

2019-11-07 Thread Sz Tengely
ldd /home/tengely/software/sage-8.9/local/lib/liblinbox.so.0 linux-vdso.so.1 (0x7ffc6d5a9000) libntl.so.42 => /usr/lib/libntl.so.42 (0x7f3971b4a000) libflint.so.13 => /usr/lib/libflint.so.13 (0x7f39717db000) libfflas.so.1 => /home/tengely/software/sage-8.9/local/lib

Re: [sage-devel] Linux install fails

2019-11-07 Thread Sz Tengely
As a test I also tried to install SageMath 8.8 and that went fine. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view

Re: [sage-devel] Linux install fails

2019-11-07 Thread Dima Pasechnik
> libgcc_s.so.1 => /home/tengely/software/sage-8.9/local/lib/libgcc_s.so.1 > (0x7f39701d4000) > libgomp.so.1 => /home/tengely/software/sage-8.9/local/lib/libgomp.so.1 > (0x7f39701a4000) This looks strange. Are you building Sage's gcc for some reason? (Most probably you're buildin