I try to build Sage on sage-debian-live (Live USB) with atlas package from debian. I use the following settings:
#!/bin/sh # build script to build sage micro release # build utils sudo apt-get install binutils gcc gfortran make m4 perl tar # use default debian lapack - compatibility and also faster build sudo apt-get install lapack libatlas-base-dev # components for build sudo apt-get install texlive imagemagick sudo apt-get install dvipng ffmpeg # server components sudo apt-get install libssl libssl-dev # TKinter for e.g. matplotlib sudo apt-get install tk tk-dev apt-get clean # wget sources - take the mirror you like best # wget -c http://mirror.switch.ch/mirror/sagemath/src/sage-* # tar xvf sage* cd sage* # environmental variables for the build export SAGE_INSTALL_GCC=no # already installed it system-wide export SAGE_FAT_BINARY=yes # build for minimal hardware requirements export SAGE_ATLAS_LIB=/usr/lib # This is the standard library path export SAGE_MATPLOTLIB_GUI=yes # let you use MATPLOTLIB directly # building sage (no docs) make build sage -t -a # make micro_release The error is: Moving old directory scipy-0.12.0.p1 to /media/sdb2/sage-6.0/local/var/tmp/sage/build/old... Setting up build directory for scipy-0.12.0.p1 Finished set up **************************************************** Host system: Linux debian 3.2.0-4-686-pae #1 SMP Debian 3.2.51-1 i686 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/i486-linux-gnu/4.7/lto-wrapper Target: i486-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 4.7.2-5' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --enable-targets=all --with-arch-32=i586 --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu Thread model: posix gcc version 4.7.2 (Debian 4.7.2-5) **************************************************** Note: CFLAGS, CXXFLAGS and SHAREDFLAGS are taken from distutils, so their current settings are ignored. Running from scipy source directory. blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in ['/media/sdb2/sage-6.0/local/lib'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in ['/media/sdb2/sage-6.0/local', '/media/sdb2/sage-6.0/local/include', '/media/sdb2/sage-6.0/local/lib'] NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in ['/media/sdb2/sage-6.0/local', '/media/sdb2/sage-6.0/local/include', '/media/sdb2/sage-6.0/local/lib'] NOT AVAILABLE /media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1494: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. warnings.warn(AtlasNotFoundError.__doc__) blas_info: libraries blas not found in ['/media/sdb2/sage-6.0/local', '/media/sdb2/sage-6.0/local/include', '/media/sdb2/sage-6.0/local/lib'] NOT AVAILABLE /media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1503: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) blas_src_info: NOT AVAILABLE /media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1506: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. warnings.warn(BlasSrcNotFoundError.__doc__) Traceback (most recent call last): File "setup.py", line 165, in <module> setup_package() File "setup.py", line 161, in setup_package configuration=configuration) File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/core.py", line 152, in setup config = configuration() File "setup.py", line 136, in configuration config.add_subpackage('scipy') File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage caller_level = 2) File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage caller_level = caller_level + 1) File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "scipy/setup.py", line 9, in configuration config.add_subpackage('integrate') File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage caller_level = 2) File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage caller_level = caller_level + 1) File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "scipy/integrate/setup.py", line 11, in configuration blas_opt = get_info('blas_opt',notfound_action=2) File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 338, in get_info return cl().get_info(notfound_action) File "/media/sdb2/sage-6.0/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 497, in get_info raise self.notfounderror(self.notfounderror.__doc__) numpy.distutils.system_info.BlasNotFoundError: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. Error building scipy. real 0m0.157s user 0m0.108s sys 0m0.044s ************************************************************************ Error installing package scipy-0.12.0.p1 *********************************************************************** It seems scipy can't find the atlas/blas/lapack libraries, although I have lots of them installed, find /usr/lib -name *blas* gives: /usr/lib/libf77blas.so /usr/lib/libcblas.a /usr/lib/libcblas.so /usr/lib/libblas.so /usr/lib/atlas-base/libcblas.so /usr/lib/atlas-base/libf77blas.so /usr/lib/atlas-base/libf77blas.a /usr/lib/atlas-base/libcblas.a /usr/lib/atlas-base/libptf77blas.a /usr/lib/atlas-base/libptcblas.a /usr/lib/atlas-base/atlas/libblas.so /usr/lib/atlas-base/atlas/libblas.a /usr/lib/atlas-base/atlas/libblas.so.3 /usr/lib/atlas-base/atlas/libblas.so.3.0 /usr/lib/atlas-base/libcblas.so.3 /usr/lib/atlas-base/libcblas.so.3.0 /usr/lib/atlas-base/libf77blas.so.3 /usr/lib/atlas-base/libf77blas.so.3.0 /usr/lib/libblas /usr/lib/libblas/libblas.so /usr/lib/libblas/libblas.a /usr/lib/libblas/libblas.so.3 /usr/lib/libblas/libblas.so.3.0 /usr/lib/libblas.so.3 /usr/lib/libblas.so.3gf /usr/lib/libcblas.so.3 /usr/lib/libcblas.so.3gf /usr/lib/libf77blas.so.3 /usr/lib/libf77blas.so.3gf /usr/lib/libgslcblas.so.0 /usr/lib/libgslcblas.so.0.0.0 /usr/lib/libreoffice/share/gallery/htmlexpo/cublast.gif /usr/lib/libreoffice/share/gallery/htmlexpo/cublast_.gif /usr/lib/pymodules/python2.7/numpy/core/_dotblas.so /usr/lib/pymodules/python2.7/numpy/core/tests/test_blasdot.py /usr/lib/pyshared/python2.6/numpy/core/_dotblas.so /usr/lib/pyshared/python2.7/numpy/core/_dotblas.so I had a similar error earlier in the build but solved that by installing libatlas_base_dev. Am I using SAGE_ATLAS_LIB correctly? The documentation (http://www.sagemath.org/doc/installation/source.html) says : SAGE_ATLAS_LIB - if you have an installation of ATLAS on your system and you want Sage to use it instead of building and installing its own version of ATLAS, set this variable to be the directory containing your ATLAS installation. It should contain the files libatlas, liblapack, libcblas, libptcblas, libf77blas, and libptf77blas, with extensions .a, .so, or .dylib. For backward compatibility, the libraries may also be in the subdirectory SAGE_ATLAS_LIB/lib/. I have all of those, although libptcblas and libptf77blas are only static. cheers -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. 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