Re: [sage-support] Re: using the system version of Python from the sage notebook?

2009-11-30 Thread Dima Pasechnik
2009/11/30 William Stein wst...@gmail.com: On Sun, Nov 29, 2009 at 9:38 AM, dimpase dimp...@gmail.com wrote: Another similar question involves using the local version of GAP in place of the supplied one. Apart from the fact that Sage is distributed with an old and (a bit) broken version of

Re: [sage-support] abs exp simplify bug

2009-11-30 Thread Burcin Erocal
Hi, On Sun, 29 Nov 2009 17:06:36 -0800 (PST) rych rych...@gmail.com wrote: var('y', domain='real') assume(y, 'real') abs(exp(y*I)).simplify() 1 abs(exp(1.1*y*I)).simplify() e^(1.1*I*y) The last result is incorrect. It seems simplify() doesn't like floating point? Thank you

Re: [sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Dr. David Kirkby
Harald Schilly wrote: On Nov 26, 2:06 am, William Stein wst...@gmail.com wrote: You can always just install any linux into virtualbox and install Sage Additional note: There is also a tutorial available to install Sage in Wubi (Ubuntu Linux on Windows partition)

[sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Marshall Hampton
In case anyone missed it, there is now a virtualbox image for 4.2.1 up on the mirrors. -M. Hampton On Nov 25, 7:06 pm, William Stein wst...@gmail.com wrote: On Wed, Nov 25, 2009 at 2:42 PM, Michael Madison madison.mich...@gmail.com wrote: I am currently using Sage 4.2 in VirtualBox on

[sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Harald Schilly
On Nov 30, 11:51 am, Dr. David Kirkby david.kir...@onetel.net wrote: Since I believe Sun's VirtualBox is now being reccomended over VMware, that seems out of date. That article is a bit old ... But why is this a more powerful environment than using a virtual machine? A virtual machine

Re: [sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Dr. David Kirkby
Harald Schilly wrote: On Nov 30, 11:51 am, Dr. David Kirkby david.kir...@onetel.net wrote: Since I believe Sun's VirtualBox is now being reccomended over VMware, that seems out of date. That article is a bit old ... But why is this a more powerful environment than using a virtual

[sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Harald Schilly
On Nov 30, 4:16 pm, Dr. David Kirkby david.kir...@onetel.net wrote: I was a bit miffed to find that one can only get a single CPU in the VirtualBox virtual machines too. I think that's not true, there is guest smp since virtualbox 3. H -- To post to this group, send email to

Re: [sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread William Stein
On Mon, Nov 30, 2009 at 7:44 AM, Harald Schilly harald.schi...@gmail.com wrote: On Nov 30, 4:16 pm, Dr. David Kirkby david.kir...@onetel.net wrote: I was a bit miffed to find that one can only get a single CPU in the VirtualBox virtual machines too. I think that's not true, there is guest

[sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Harald Schilly
On Nov 30, 5:11 pm, William Stein wst...@gmail.com wrote: Maybe on Solaris things are different? ... or the cpu misses vt-x (???) extensions? h -- To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to

Re: [sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Dr. David Kirkby
William Stein wrote: On Mon, Nov 30, 2009 at 7:44 AM, Harald Schilly harald.schi...@gmail.com wrote: On Nov 30, 4:16 pm, Dr. David Kirkby david.kir...@onetel.net wrote: I was a bit miffed to find that one can only get a single CPU in the VirtualBox virtual machines too. I think that's not

[sage-support] Thanks!! - Re: ode_solver issues

2009-11-30 Thread ryan_n
Thanks everyone for all of your help and advice! I just showed my boss how I used ode_solver/sage/python to model and fit some tricky chemical kinetics data, and needless to say, she was very impressed. I'm thinking this ode_solver function will be quite useful for our lab in general. If I play

[sage-support] Re: Thanks!! - Re: ode_solver issues

2009-11-30 Thread Jason Grout
ryan_n wrote: Thanks everyone for all of your help and advice! I just showed my boss how I used ode_solver/sage/python to model and fit some tricky chemical kinetics data, and needless to say, she was very impressed. I'm thinking this ode_solver function will be quite useful for our lab

[sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Harald Schilly
On Nov 30, 6:18 pm, Dr. David Kirkby david.kir...@onetel.net wrote: I'm obviously missing something. I don't know exactly how it works and if i'm corrrect, but when you go into the virtualbox program window, select the linux/sage environment, go to settings system acceleration, is there enable

[sage-support] Re: regex in sage

2009-11-30 Thread biotic.computer
You can also do analysis without using any python library look at this example on: http://bioticcomputer.blogspot.com/ -- To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com For more options,

[sage-support] Re: regex in sage

2009-11-30 Thread Marshall Hampton
No offense but all of your examples would be a _lot_ easier with biopython, which is a pretty mature and well-tested codebase for doing all sorts of bioinformatics in python. I really recommend you look at its tutorial if you haven't yet: http://biopython.org/DIST/docs/tutorial/Tutorial.html

Re: [sage-support] Re: Virtualbox Sage 4.2.1... will there be one

2009-11-30 Thread Dr. David Kirkby
Harald Schilly wrote: On Nov 30, 6:18 pm, Dr. David Kirkby david.kir...@onetel.net wrote: I'm obviously missing something. I don't know exactly how it works and if i'm corrrect, but when you go into the virtualbox program window, select the linux/sage environment, go to settings system

[sage-support] interact and certain input

2009-11-30 Thread kcrisman
Dear support, I'm giving a talk Wednesday and would like to do the following interact as an example of how easy interacts are: y = var('y') @interact def _(g=input_box(default = 1-y)): P=plot_slope_field(g,(x,0,3),(y,0,20)) y = function('y',x) f = desolve(diff(y,x) + g, y, ics=[2,2])

[sage-support] Re: interact and certain input

2009-11-30 Thread Jason Grout
kcrisman wrote: Dear support, I'm giving a talk Wednesday and would like to do the following interact as an example of how easy interacts are: y = var('y') @interact def _(g=input_box(default = 1-y)): P=plot_slope_field(g,(x,0,3),(y,0,20)) y = function('y',x) f =

[sage-support] Re: SIGSEGV ERROR

2009-11-30 Thread Rolandb
I located the file at https://:8000/home/pub/0 SIGSEGV with version 4.1, Windows. I did not compile it from source. No output at all with version 4.2.1 using KAIST. On 29 nov, 20:50, Burcin Erocal bur...@erocal.org wrote: Hi Roland, On Sun, 29 Nov 2009 11:46:00 -0800 (PST) Rolandb

[sage-support] Re: interact and certain input

2009-11-30 Thread Marshall Hampton
You probably also want to do something like P=plot_slope_field(-g,(x,0,3),(y,0,20)) since the slope of the solution is -g, not g. -Marshall On Nov 30, 4:37 pm, Jason Grout jason-s...@creativetrax.com wrote: kcrisman wrote: Dear support, I'm giving a talk Wednesday and would like to do

[sage-support] Re: interact and certain input

2009-11-30 Thread kcrisman
It looks like you are confusing y-as-a-variable and y-as-a-function an awful lot.  How about: Yes, because I was hoping to make it as easy as possible to switch from the static version. Unfortunately, this isn't that :( but it's probably the best we can do? - kcrisman y = var('y')

[sage-support] Re: interact and certain input

2009-11-30 Thread kcrisman
P=plot_slope_field(-g,(x,0,3),(y,0,20)) since the slope of the solution is -g, not g. Yeah, there was a typo of + for -. - kcrisman -- To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com

[sage-support] Cannot open the disk 'D:\Program Files\Sage\sage-vmware-4.1\disk.vmdk'

2009-11-30 Thread Rolandb
Hi, How serious is the following message? Cannot open the disk 'D:\Program Files\Sage\sage-vmware-4.1\disk.vmdk' or one of the snapshot disks it depends on. Reason: Failed to lock the file. Roland -- To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this

Re: [sage-support] Re: using the system version of Python from the sage notebook?

2009-11-30 Thread Dima Pasechnik
William, I'm curious -- what in particular is broken about GAP-4.4.10?  We tried to ship 4.4.12, but found it to be more broken; in particular, it didn't work on Itanium Linux boxes, which is one of our officially supported platforms. I tried to reproduce your problem on an Itanium cluster at