I am having problems compiling Sage on the following setup:
ASUS K52J laptop with Intel Core I3 processor with 4G RAM running Windows 7
VirtualBox 4.1.6
Guest OS Ubuntu 11.10 desktop (i386) with 1933 M RAM allocated. VirtualBox
guest additions have been installed
The install fails during the installation of Atlas with an Illegal
instruction.
Here is atlas-3.8.4.log up to the first error :
Warning: Attempted to overwrite SAGE_ROOT environment variable
atlas-3.8.4
Machine:
Linux UbuntuSage 3.0.0-13-generic #22-Ubuntu SMP Wed Nov 2 13:25:36 UTC
2011 i686 i686 i386 GNU/Linux
Deleting directories from past builds of previous/current versions of
atlas-3.8.4
Extracting package
/home/mike/sage/sage-4.7.2/spkg/standard/atlas-3.8.4.spkg ...
-rw-r--r-- 1 mike mike 2874766 2011-06-17 12:33
/home/mike/sage/sage-4.7.2/spkg/standard/atlas-3.8.4.spkg
Finished extraction
****************************************************
Host system
uname -a:
Linux UbuntuSage 3.0.0-13-generic #22-Ubuntu SMP Wed Nov 2 13:25:36 UTC
2011 i686 i686 i386 GNU/Linux
****************************************************
****************************************************
CC Version
gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6.1/lto-wrapper
Target: i686-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro
4.6.1-9ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
--enable-languages=c,c++,fortran,objc,obj-c++,go --prefix=/usr
--program-suffix=-4.6 --enable-shared --enable-linker-build-id
--with-system-zlib --libexecdir=/usr/lib --without-included-gettext
--enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
--libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-plugin
--enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i686
--with-tune=generic --enable-checking=release --build=i686-linux-gnu
--host=i686-linux-gnu --target=i686-linux-gnu
Thread model: posix
gcc version 4.6.1 (Ubuntu/Linaro 4.6.1-9ubuntu3)
****************************************************
make[2]: Entering directory
`/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build'
gcc
-I/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/include
-g -w -c
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/src/atlconf_misc.c
gcc
-I/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/include
-g -w -o xconfig
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/src/config.c
atlconf_misc.o
make[2]: Leaving directory
`/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build'
./xconfig -d s
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src/ -d b
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build -Ss flapack
/home/mike/sage/sage-4.7.2/local/lib/liblapack.a -Si cputhrchk 0 -Fa alg
-fPIC -C if sage_fortran -C xc gcc -C ic gcc -C dm gcc -C sm gcc -C dk gcc
-C sk gcc -b 32 -O 1
make[2]: Entering directory
`/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build'
gcc
-I/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/include
-g -w -c
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/src/atlconf_misc.c
gcc
-I/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/include
-g -w -o xconfig
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/src/config.c
atlconf_misc.o
make[2]: Leaving directory
`/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build'
./xconfig -d s
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src/ -d b
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build -Ss flapack
/home/mike/sage/sage-4.7.2/local/lib/liblapack.a -Si cputhrchk 0 -Fa alg
-fPIC -C if sage_fortran -C xc gcc -C ic gcc -C dm gcc -C sm gcc -C dk gcc
-C sk gcc -b 32 -O 1
make[2]: Entering directory
`/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build'
gcc
-I/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/include
-g -w -c
/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/src/probe_comp.c
gcc
-I/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build/../src//CONFIG/include
-g -w -o xprobe_comp probe_comp.o atlconf_misc.o
rm -f config1.out
make -j1 atlas_run
atldir=/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build
exe=xprobe_comp args="-v 0 -o atlconf.txt -O 1 -A 19 -Si nof77 0 -C ic
'gcc' -Fa ic '-fPIC' -C sm 'gcc' -Fa sm '-fPIC' -C dm 'gcc' -Fa dm '-fPIC'
-C sk 'gcc' -Fa sk '-fPIC' -C dk 'gcc' -Fa dk '-fPIC' -C xc 'gcc' -Fa xc
'-fPIC' -C if 'sage_fortran' -Fa if '-fPIC' -b 32" \
redir=config1.out
make[3]: Entering directory
`/home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build'
cd /home/mike/sage/sage-4.7.2/spkg/build/atlas-3.8.4/ATLAS-build ;
./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 19 -Si nof77 0 -C ic 'gcc' -Fa
ic '-fPIC' -C sm 'gcc' -Fa sm '-fPIC' -C dm 'gcc' -Fa dm '-fPIC' -C sk
'gcc' -Fa sk '-fPIC' -C dk 'gcc' -Fa dk '-fPIC' -C xc 'gcc' -Fa xc '-fPIC'
-C if 'sage_fortran' -Fa if '-fPIC' -b 32 > config1.out
Illegal instruction
make[7]: *** [atlas_run] Error 132
make[6]: *** [IRunF2C_name] Error 2
Any help would be appreciated.
Mike Fawcett
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