Correlated features typically have the property that they are tending to be
similarly predictive of the outcome.
L1 and L2 are both a preference for low coefficients.
If a coefficient can be reduced yet another coefficient maintains similar
loss, the these regularization methods prefer this soluti
Pandas has a read_excel function that can load data from an excel
spreadsheet:
https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.read_excel.html
On Sun, Oct 6, 2019 at 1:57 AM Mike Smith wrote:
> Can I call an MSExcel cell range in a function such as model.predict(),
> instead o
I looked into like a while ago. There were differences in which algorithms
regularized the intercept, and which ones do not. (I believe liblinear
does, lbgfs does not).
All of the algorithms disagreed with logistic regression in scipy.
- Stuart
On Wed, May 29, 2019 at 10:50 AM Andreas Mueller wr
https://papers.nips.cc/paper/2645-confidence-intervals-for-the-area-under-the-roc-curve.pdf
Does scikit (or other Python libraries) provide functions to measure the
confidence interval of AUROC scores? Same question also for mean average
precision.
It seems like this should be a standard results r
Would the output be different if you simply wrapped the whole process with
reshaping 3D input to 2d?
On Wed, Dec 5, 2018 at 7:14 PM lampahome wrote:
> I want to regress time series prediction per week, so the unit of train
> data X is the day ex: Mon, Tue, Wed...etc.
>
> Ex: train data X is like
liblinear regularizes the intercept (which is a questionable thing to
do and a poor choice of default in sklearn).
The other solvers do not.
On Tue, Jul 24, 2018 at 4:07 AM, Benoît Presles
wrote:
> Dear scikit-learn users,
>
> I am using the recursive feature elimination (RFE) tool from sklearn t
Scikit has a section on 'GLMs'
1.1. Generalized Linear Models
http://scikit-learn.org/stable/modules/linear_model.html
not covered there? (That page doesn't look like GLMs -- mostly it
covers different fitting, loss and regularlization methids, but not
general functional distributions).
If not, ch
Hi Sepand,
Thanks for this -- looks useful. I had to write something similar (for
the binary case) and wish scikit had something like this.
I wonder if there's something similar for the binary class case where,
the prediction is a real value (activation) and from this we can also
derive
- CMs fo
Good know -- thank you.
On Fri, Oct 6, 2017 at 5:25 AM, wrote:
>
>
> On Thu, Oct 5, 2017 at 3:27 PM, wrote:
>>
>>
>>
>> On Thu, Oct 5, 2017 at 2:52 PM, Stuart Reynolds
>> wrote:
>>>
>>> Turns out sm.Logit does allow setting the
ed glmnet ( in R) there is a python version
> https://web.stanford.edu/~hastie/glmnet_python/
>
>
>
>
> On Thu, Oct 5, 2017 at 6:34 PM, Stuart Reynolds
> wrote:
>>
>> Thanks Josef. Was very useful.
>>
>> result.remove_data() reduces a 5 parameter L
tol=tol, gtol=tol, pgtol=tol,
#maxiter=maxiter,
##full_output=False,
disp=DISP)
print "sm.GLM.fit", method, time.time() - t
On Thu, Oct 5, 2017 at 10:32 AM, Sean Violante wrote:
> Stu
ppers in statsmodels for doing this or should I roll my own?
- Stu
On Wed, Oct 4, 2017 at 3:43 PM, wrote:
>
>
> On Wed, Oct 4, 2017 at 4:26 PM, Stuart Reynolds
> wrote:
>>
>> Hi Andy,
>> Thanks -- I'll give another statsmodels another go.
>> I rememb
n, and it's a concept that only applies to a subset of models.
> We try to have a consistent interface for all our estimators, and
> this doesn't really fit well within that interface.
>
> Hth,
> Andy
>
>
> On 10/04/2017 03:58 PM, Stuart Reynolds wrote:
>&g
I'd like to fit a model that maps a matrix of continuous inputs to a
target that's between 0 and 1 (a probability).
In principle, I'd expect logistic regression should work out of the
box with no modification (although its often posed as being strictly
for classification, its loss function allows
Let's say I have a base estimator that predicts the likelihood of an
binary (Bernoulli) outcome:
model.fit(X, y) where y contains [0 or 1]
P = model.predict(X)/predict_proba(X) give values in the range [0 to 1]
(model here might be a calibrated LogisticRegression model).
Is there a way to est
Is it possible to efficiently get at the branch statistics that
decision tree algorithms iterate over in scikit?
For example if the root population has the class counts in the output vector:
c0: 5000
c1: 500
Then I'd like to iterate over:
# For a boolean (2 valued category)
f1=True:
I hope not. And not accoring to the docs...
https://github.com/scikit-learn/scikit-learn/blob/ab93d65/sklearn/linear_model/logistic.py#L947
class_weight : dict or 'balanced', optional
Weights associated with classes in the form ``{class_label: weight}``.
If not given, all classes are supposed to h
+1
LCS and its many many variants seem very practical and adaptable. I'm
not sure why they haven't gotten traction.
Overshadowed by GBM & random forests?
On Fri, Jul 21, 2017 at 11:52 AM, Sebastian Raschka
wrote:
> Just to throw some additional ideas in here. Based on a conversation with a
> co
> curve.
>
> On 18 July 2017 at 02:41, Stuart Reynolds
> wrote:
>
>> Does scikit have a function to find the maximum f1 score (and decision
>> threshold) for a (soft) classifier?
>>
>> - Stuart
>>
> _
And... with that in mind -- are there methods that explicitly try to
optimize the f1 score?
On Mon, Jul 17, 2017 at 9:41 AM, Stuart Reynolds
wrote:
> Does scikit have a function to find the maximum f1 score (and decision
> threshold) for a (soft) classifier?
>
&
Does scikit have a function to find the maximum f1 score (and decision
threshold) for a (soft) classifier?
- Stuart
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Hmmm... is it possible to place your original data into a memmap?
(perhaps will clear out 8Gb, depending on SGDClassifier internals?)
https://docs.scipy.org/doc/numpy/reference/generated/numpy.memmap.html
https://stackoverflow.com/questions/14262433/large-data-work-flows-using-pandas
- Stuart
On
; Best,
> Sebastian
>
> > On Mar 13, 2017, at 12:57 PM, Stuart Reynolds
> wrote:
> >
> > Is there an implementation of logistic regression with elastic net
> regularization in scikit?
> > (or pointers on implementing this - its seems non-convex and s
Perfect. Thanks -- will give it a go.
On Mon, Mar 13, 2017 at 10:04 AM, Jacob Schreiber
wrote:
> Hi Stuart
>
> Take a look at this issue: https://github.com/scikit-learn/scikit-learn/
> issues/2968
>
> On Mon, Mar 13, 2017 at 9:57 AM, Stuart Reynolds <
> stu...@s
Both libraries are heavily parameterized. You should check what the
defaults are for both.
Some ideas:
- What regularization is being used. L1/L2?
- Does the regularization parameter have the same interpretation? 1/C =
lambda? Some libraries use C. Some use lambda.
- Also, some libraries regula
Is there an implementation of logistic regression with elastic net
regularization in scikit?
(or pointers on implementing this - its seems non-convex and so you might
expect poor behavior with some optimizers)
- Stuart
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scik
Does scikit provide any event-rate/time-to-event models, or other models
that are specifically time-dependent? (e.g. models that output the # events
per unit of time)
Examples might include: Poisson model, or Cox proportional hazard.
There was some discussion about pulling from statsmodels,
htt
The statsmodels package may have more of this kind of thing.
http://statsmodels.sourceforge.net/devel/glm.html
http://statsmodels.sourceforge.net/devel/dev/generated/statsmodels.base.model.GenericLikelihoodModelResults.pvalues.html?highlight=pvalue
I assume you're talking about pvalues for a mode
lidation sample of ~6 datapoints.. I'm
>> still very skeptical of that giving you proper results for a complex model.
>> Will this larger dataset be of exactly the same data? Just taking another
>> unrelated dataset and showing that a MLP can learn it doesn'
If you dont have a large dataset, you can still do leave one out cross
validation.
On Mon, Jan 9, 2017 at 3:42 PM Thomas Evangelidis wrote:
>
> Jacob & Sebastian,
>
> I think the best way to find out if my modeling approach works is to find
> a larger dataset, split it into two parts, the first
stion is whether it's possible to improve the estimator by
> additionally adjusting the mean or the threshold for 0-1 predictions. It
> might depend on the criteria to choose the penalization. I don't know and
> have no idea what scikit-learn does.
>
> Josef
>
>
a bias for imbalanced data. Can you tell me more? Why
> does it not appear with the relaxed regularization? Also, using the same
> data with statsmodels LR, which has no regularization, this doesn't seem to
> be a problem. Any suggestions for
>
> how I could fix this are welc
Sent from my phone. Please forgive brevity and mis spelling
> On Dec 13, 2016, at 19:29, Stuart Reynolds
> wrote:
>
>> I'd like to cache some functions to avoid rebuilding models like so:
>>
>> @cached
>> def train(model, dataparams): ...
>>
LR is biased with imbalanced datasets. Is your dataset unbalanced? (e.g. is
there one class that has a much smaller prevalence in the data that the
other)?
On Thu, Dec 15, 2016 at 1:02 PM, Rachel Melamed
wrote:
> I just tried it and it did not appear to change the results at all?
> I ran it as f
You're looking at a tiny subset of the possible cutoff thresholds for this
classifier.
Lower thresholds will give higher tot at the expense of tpr.
Usually, AUC is computed at the integral of this graph over the whole range
of FPRs (from zero to one).
If you have your classifier output probabiliti
I think he's asking whether returning the model is part of the API (i.e. is
it a bug that SVM and NB don't return self?).
On Tue, Dec 13, 2016 at 12:23 PM, Jacob Schreiber
wrote:
> The fit method returns the object itself, so regardless of which way you
> do it, it will work. The reason the fit
I'd like to cache some functions to avoid rebuilding models like so:
@cached
def train(model, dataparams): ...
model is an (untrained) scikit-learn object and dataparams is a dict.
The @cached annotation forms a SHA checksum out of the parameters of the
function it annotates and returns
I'm looking for a decision tree and RF implementation that supports missing
data (without imputation) -- ideally in Python, Java/Scala or C++.
It seems that scikit's decision tree algorithm doesn't allow this -- which
is disappointing because its one of the few methods that should be able to
sensi
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