Re: [Scikit-learn-general] Possible Incorrect Labels on "Lasso and ElasticNet" example page?

2013-04-29 Thread Gael Varoquaux
Hi, It was a cosmetic variant: 'weights' and 'coefficients' mean the same for linear models. And as iterations are done in a logarithmic way, the x axis was correct to a scaling. None the less, I fixed the example to be less confusing: https://github.com/scikit-learn/scikit-learn/commit/f924d3e46

[Scikit-learn-general] Possible Incorrect Labels on "Lasso and ElasticNet" example page?

2013-04-29 Thread _ Rolpher
I'm looking at the example page for Lasso and ElasticNet ( http://scikit-learn.org/0.11/auto_examples/linear_model/plot_lasso_coordinate_descent_path.html ). The code is clearly plotting coefficients, but the ylabel says "weights". Similarly, the xlabel is "-log(Lambda)", but it looks like it

Re: [Scikit-learn-general] Error in nose test while installing scikit

2013-04-29 Thread Vlad Niculae
It looks like an out-of-date Cython-generated file, maybe. Did you install using the windows binaries? It would indeed be helpful to describe the installation procedure that you followed. Vlad On Mon, Apr 29, 2013 at 6:58 PM, Andreas Mueller wrote: > Hey Chandrika. > Sorry for the late reply. >

Re: [Scikit-learn-general] SVM stability and LR feature mapping

2013-04-29 Thread Richard Cubek
> Why don't you use a kernel SVM (SVC)? > There is no kernel Logistic Regression in sklearn. But there are some > kernel-approximation > methods that you could use together with various kernels and then use > the standard LogisticRegression. I don't know how to combine these methods, so I will hav

Re: [Scikit-learn-general] SVM stability and LR feature mapping

2013-04-29 Thread Gael Varoquaux
On Mon, Apr 29, 2013 at 10:53:21AM +0200, Andreas Mueller wrote: > > You might try totally random trees embedding for this purpose: > > http://scikit-learn.org/stable/modules/ensemble.html#totally-random-trees-embedding > > and > > http://scikit-learn.org/stable/auto_examples/ensemble/plot_random_f

Re: [Scikit-learn-general] SVM stability and LR feature mapping

2013-04-29 Thread Richard Cubek
>> So is there any method within scikit, that could help me finding a >> feature mapping? > > I am not sure what you mean by feature mapping? Do you mean a non > linear > mapping to a feature spacing in which the classes should be > separable? Yes, sorry for being imprecise. > You might try tot

[Scikit-learn-general] ICML 2013 Student Volunteer Scholarships

2013-04-29 Thread Vikram Kamath
I know there are a bunch of PhD candidates on the mailing list so I thought I would share this: - The 30th International Conference on Machine Learning (ICML 2013) seeks student vol

Re: [Scikit-learn-general] GSOC 2013 proposal: biclustering

2013-04-29 Thread Kemal Eren
Hi Gael, > followed by Cheng and Church probably. I agree that including an algorithm that optimizes mean-square residue would be useful. Another option would be to implement FLOC (Yang 2003; 223 citations), which enhances Cheng and Church in a number of ways: it faster, it finds multiple biclust

Re: [Scikit-learn-general] Distributed RandomForests

2013-04-29 Thread Youssef Barhomi
Thank you Andreas! On Sat, Apr 27, 2013 at 2:03 PM, Andreas Mueller wrote: > Hi Youssef. > I would strongly advise you to use a image specific random forest > implementation. > There is a very good implementation by some other MSRC people: > > http://research.microsoft.com/en-us/downloads/03e0c

Re: [Scikit-learn-general] GSOC 2013 proposal: biclustering

2013-04-29 Thread Gael Varoquaux
On Mon, Apr 29, 2013 at 09:20:24AM +0200, Kemal Eren wrote: > The Spectral coclustering algorithm from 2001 with 888 citations is a very > similar model to the Kluger paper from 2003, which applied the same concepts > to > microarray data. I originally cited the Kluger paper only because it is mor

Re: [Scikit-learn-general] plot_affinity_propagation.py needs an update?

2013-04-29 Thread Andreas Mueller
I can't find the code you quoted. Which example is this. There is this affinity propagation example: http://scikit-learn.org/stable/auto_examples/cluster/plot_affinity_propagation.html#example-cluster-plot-affinity-propagation-py which doesn't contain the lines. On 04/28/2013 12:05 AM, ap wrote:

[Scikit-learn-general] plot_affinity_propagation.py needs an update?

2013-04-29 Thread ap
Using 0.13.1 example code I found the following difference in the Affinity call, and I am proposing a possible fix/change for that example program below. WAS: (throws warnings) af = AffinityPropagation().fit(S, p) Traceback (most recent call last): File "E:\p\cr\rho\plot_affinity_propag

Re: [Scikit-learn-general] Error in nose test while installing scikit

2013-04-29 Thread Andreas Mueller
Hey Chandrika. Sorry for the late reply. These errors look pretty weird. Which version have you installed and how did you run the tests? Cheers, Andy On 02/24/2011 05:05 PM, Chandrika Bhardwaj wrote: Hey all, I wanted to use sci-kits. After completing installation of scikits, I tried testin

Re: [Scikit-learn-general] GSOC idea

2013-04-29 Thread Şükrü Bezen
Thanks for the feedback. Actually, implementation and testing of association rule learning can be finished sooner than what I thought, two week in total, because of its simplicity so updated schedule would be like: • Getting familiar with scikit-learn, API structure etc. (1 week) • Gene

Re: [Scikit-learn-general] SVM stability and LR feature mapping

2013-04-29 Thread Andreas Mueller
On 04/28/2013 08:06 PM, Richard Cubek wrote: > Hello everyone, > > 2) Playing around with LR, the results "look interesting" > (https://dl.dropboxusercontent.com/u/95888530/logreg_1.png), but I was > not able to reproduce a model adopting/"overfitting" to every single > data point, as in the SVM ex

Re: [Scikit-learn-general] SVM stability and LR feature mapping

2013-04-29 Thread Andreas Mueller
On 04/28/2013 11:19 PM, Gael Varoquaux wrote: > On Sun, Apr 28, 2013 at 08:06:11PM +0200, Richard Cubek wrote: >> how stable the python binding is regarding the website issue mentioned >> above. > Faily stable I would say. The remarks applied years ago. > >> So is there any method within scikit, th

Re: [Scikit-learn-general] GSOC idea

2013-04-29 Thread Gael Varoquaux
On Mon, Apr 29, 2013 at 01:28:09AM +0300, Şükrü Bezen wrote: > • Getting familiar with scikit-learn, API structure etc. (1 week) > • Generating, finding datasets for future use. (1-3 days) > • Implementing association rule learning, (1 week) > • Testing, documenting (1 week) > • Implement

Re: [Scikit-learn-general] GSOC 2013 proposal: biclustering

2013-04-29 Thread Kemal Eren
Hi all, Thanks for your comments. I have made the suggested revisions to my proposal. A few comments and questions: Since nsNMF is out, there is still some time available. Any other algorithms that you would be interested in? The Spectral coclustering algorithm from 2001 with 888 citations is a