Re: [Scikit-learn-general] Graph-regularized Non-negative Matrix Factorization (GNMF)

2014-11-13 Thread Guillaume Dumas
Dear Dav, NNMF is indeed widely used and it is already implemented in scikit-learn: http://scikit-learn.org/stable/modules/generated/sklearn.decomposition.NMF.html I was proposing to add the Graph Regularized extension that start to get attention in genomics, also known as Network Based Stratifica

Re: [Scikit-learn-general] Graph-regularized Non-negative Matrix Factorization (GNMF)

2014-11-13 Thread Dav Clark
I mostly just lurk here, but I figure I may be one of few folks who knows much about the motor control world, where NNMF is highly useful. You can find a nice motivation of why NNMF is useful here: https://neurolab.gatech.edu/wp/wp-content/uploads/ting/papers/Ting%20and%20Chvatal%202010.pdf Basic

Re: [Scikit-learn-general] Graph-regularized Non-negative Matrix Factorization (GNMF)

2014-11-13 Thread Guillaume Dumas
Ok, let's wait a little then. Thanks for your feebacks Gaƫl and Alex! Guillaume On Thu, Nov 13, 2014 at 11:06 AM, Gael Varoquaux < gael.varoqu...@normalesup.org> wrote: > On Thu, Nov 13, 2014 at 10:47:52AM +0100, Guillaume Dumas wrote: > > I thus wanted to first check with core dev team if this

Re: [Scikit-learn-general] Graph-regularized Non-negative Matrix Factorization (GNMF)

2014-11-13 Thread Gael Varoquaux
On Thu, Nov 13, 2014 at 10:47:52AM +0100, Guillaume Dumas wrote: > I thus wanted to first check with core dev team if this feature would > be useful for scikit-learn, if anybody is already working on it, and if > not if there are people who may be interested to help me checking and > adapting the c

Re: [Scikit-learn-general] Graph-regularized Non-negative Matrix Factorization (GNMF)

2014-11-13 Thread Guillaume Dumas
Hi Alex, I just went on this page and it say "highly advised that you contact the developers on the mailing list (this one)." Honestly, I read the whole Contributing guidelines but does not feel at this level of mastering of Python development yet (I have no idea how to do a correct pull request

[Scikit-learn-general] Rand Score Generalization for multiple comparisons

2014-11-13 Thread federico vaggi
Hi, Is there a generalization of the rand score when one wishes to compare more than 2 clusterings at the same time? I am trying to see how similar are the clustering results from multiple different algorithms, and it would nice to do it this way. I was thinking, a 'hackish' way of doing it woul

Re: [Scikit-learn-general] Graph-regularized Non-negative Matrix Factorization (GNMF)

2014-11-13 Thread Alexandre Gramfort
hi Guillaume, have a look at: http://scikit-learn.org/stable/developers/index.html HTH Alex On Thu, Nov 13, 2014 at 10:22 AM, Guillaume Dumas wrote: > Hi! > > I am trying to implement a recent methods of non-negative matrix > factorization for scikit-learn. > To date, I adapted the existing s

[Scikit-learn-general] Graph-regularized Non-negative Matrix Factorization (GNMF)

2014-11-13 Thread Guillaume Dumas
Hi! I am trying to implement a recent methods of non-negative matrix factorization for scikit-learn. To date, I adapted the existing scikit-learn functions for NNF but would may be need help to make it pull-able since I am rather new in Python development. Here is the iPython notebook showing wher