Re: [Scikit-learn-general] errors when installing

2015-10-29 Thread Andreas Mueller
Hi Paul (Bo?). Which version of scikit-learn are you using and which version of numpy and scipy? I guess scipy 0.16 numpy 1.10 and scikit-learn 0.16.2. The errors for the newer versions of scipy and numpy are fixed in the scikit-learn development version. You shouldn't be concerned by these erro

[Scikit-learn-general] errors when installing

2015-10-29 Thread Bo Liu
Hi, here is what I got when I tired to install the sklearn. Thanks Paul ERROR: sklearn.gaussian_process.tests.test_gaussian_process.test_2d -- Traceback (most recent call last): File "/Users/paul/Library/Enthought/Canopy_64b

[Scikit-learn-general] errors when installing

2015-10-29 Thread Bo Liu
Hi, here is what I got when I tired to install the sklearn. Thanks Paul ERROR: sklearn.gaussian_process.tests.test_gaussian_process.test_2d -- Traceback (most recent call last): File "/Users/paul/Library/Enthought/Canopy_64b

Re: [Scikit-learn-general] How to build a custom tree kernel with SVM

2015-10-29 Thread Jacob Schreiber
You have sent this question multiple times to this mailing list. You might consider responding to the other replies. On Thu, Oct 29, 2015 at 12:28 PM, Shreyas Saligrama chandrakan < ssali...@hawk.iit.edu> wrote: > Hi, > > I would like to build a custom tree kernel with SVM's using scikit-learn. >

[Scikit-learn-general] How to build a custom tree kernel with SVM

2015-10-29 Thread Shreyas Saligrama chandrakan
Hi, I would like to build a custom tree kernel with SVM's using scikit-learn. How do i go about it to build this custom kernel. Any suggestions or answers would be helpful. Thanks. -- _

Re: [Scikit-learn-general] Critical Difference Diagram

2015-10-29 Thread Arnaud Joly
scipy allows to perform the friedman test. Orange has the tool to drawn the critical distance diagram. And you can easily compute the critical distance using stats model: from statsmodels.stats.libqsturng import qsturng q_alpha = qsturng(1 - alpha, n_methods, np.inf) / np.sqrt(2) cd = q_alpha * n

Re: [Scikit-learn-general] MICE Imputation for SciKit Learn

2015-10-29 Thread Andreas Mueller
On 10/23/2015 05:17 PM, Ouwen Huang wrote: > > Hey Andy, > > I don't think it is so bad to code. Perhaps I could do a related > projects repo first and then see if something similar can be moved in > officially? > Yeah sounds good. --

Re: [Scikit-learn-general] Critical Difference Diagram

2015-10-29 Thread Andreas Mueller
Sorry, don't know of a package. But it might be interesting for sklearn? So that's a Nemenyi test? https://en.wikipedia.org/wiki/Nemenyi_test I never heard of that but it sounds interesting. It seems a bit hard to interpret, though. Also: does the diagram punt if the initial multiple comparison

Re: [Scikit-learn-general] Estimators of RAKEL and (Ensemble) Classifier Chain for multilabel proposal

2015-10-29 Thread Andreas Mueller
(That is not to say you should rename it now. Just send a pull request to multiclass and we discuss in the PR). On 10/26/2015 10:04 AM, Al wrote: Good afternoon, The vanilla rakel classifier chain (with its dependencies) is (I think) at last operational. However, I am not sure where I should

Re: [Scikit-learn-general] Estimators of RAKEL and (Ensemble) Classifier Chain for multilabel proposal

2015-10-29 Thread Andreas Mueller
Hi Al. They should probably go into "multiclass" at the moment. Which should maybe be renamed "multilabel"? Or "reduction" (which is really non-intuitive for non-experts)? Cheers, Andy On 10/26/2015 10:04 AM, Al wrote: Good afternoon, The vanilla rakel classifier chain (with its dependenci

Re: [Scikit-learn-general] Query Regarding parameters settings of SVM

2015-10-29 Thread Andreas Mueller
What do you mean by cost factor? Have you implemented the tree kernel yourself? On 10/26/2015 06:53 PM, Shreyas Saligrama chandrakan wrote: Hi, For my experiment, i would like to build a SVM tree kernel model by tuning the weight of the contribution of trees and cost factor of the trees. So,

Re: [Scikit-learn-general] indices_ on DecisionTreeRegressor

2015-10-29 Thread Andreas Mueller
Hi Mike. This has been fixed in the development version (and the release candidate which will be released imminently). Best, Andy On 10/27/2015 05:59 PM, Michael Albert wrote: Greetings! When pickling a random forest fit, the storage requirements seem disproportionately large. It seems tha

Re: [Scikit-learn-general] Query Regarding usage of SVM with Tree Kernels

2015-10-29 Thread Andreas Mueller
Hi Shreyas. Tree kernels are not implemented in scikit-learn, but it should be possible to provide your own implementation as a callable to SVC. I'm not sure how you want to use them in an unsupervised manner, though. Do you want to do one-class SVM? Andy On 10/23/2015 10:27 PM, Shreyas Sali

[Scikit-learn-general] Critical Difference Diagram

2015-10-29 Thread Dayvid Victor
Hi, Do you guys know any tool to generate CDdiagram - in order to evaluate the difference of performance of sklearn classifiers? http://theoval.cmp.uea.ac.uk/matlab/critdiff/cd1.png​ There is a R package called performanceEstimation which has a CDdiagram implementation, but it uses an specific