Re: [Scikit-learn-general] GraphLasso

2012-02-20 Thread Mathias Verbeke
Thanks! And does it make sense to use L1 regularisation here (irrespective of the graph structure)? Best, Mathias On Mon, Feb 20, 2012 at 11:06 AM, Gael Varoquaux < gael.varoqu...@normalesup.org> wrote: > On Mon, Feb 20, 2012 at 10:35:51AM +0100, Mathias Verbeke wrote: > > I wo

Re: [Scikit-learn-general] GraphLasso

2012-02-20 Thread Mathias Verbeke
Hi Olivier, Thanks for the fast reply! > I have a high-dimensional feature set, where the features originate from > > graphs. I was wondering if the use of GraphLasso applies and would be a > good > > idea in this case? And if it would be, can I then just apply it on the > > feature vectors or do

[Scikit-learn-general] GraphLasso

2012-02-20 Thread Mathias Verbeke
Hi all, I have a high-dimensional feature set, where the features originate from graphs. I was wondering if the use of GraphLasso applies and would be a good idea in this case? And if it would be, can I then just apply it on the feature vectors or do I need to input the originating graph structure

Re: [Scikit-learn-general] GridSearch

2012-02-03 Thread Mathias Verbeke
Hi Andreas, You would have to add it to the "fit" method of SVC, not GridSearchCV. > How can this be done in the digits example, since there's only one fit there, namely the one of GridSearch? > > Does this mean class weighting isn't possible at all with GridSearch? > At the moment, yes. > > If

Re: [Scikit-learn-general] GridSearch

2012-02-03 Thread Mathias Verbeke
ght should be moved to > the initialization of SVC. > I am (somewhat) working on this. > > Cheers, > Andy > > > > On 02/03/2012 01:23 PM, Mathias Verbeke wrote: > > Hi Olivier, > > That's something I tried already, but then I get: > > AssertionError: I

Re: [Scikit-learn-general] GridSearch

2012-02-03 Thread Mathias Verbeke
Hi Olivier, That's something I tried already, but then I get: AssertionError: Invalid parameter class_weight for estimator SVC Any idea what can be wrong? Thanks, Mathias On Fri, Feb 3, 2012 at 12:19 PM, Olivier Grisel wrote: > 2012/2/3 Mathias Verbeke : > > Hi Adreas, > &

Re: [Scikit-learn-general] GridSearch

2012-02-03 Thread Mathias Verbeke
stable/modules/generated/sklearn.grid_search.GridSearchCV.html#sklearn.grid_search.GridSearchCV>) > that decides exactly that. > It is "True" by default. > > Cheers, > Andy > > > On 02/03/2012 10:54 AM, Mathias Verbeke wrote: > > Hi all, > > I'm currentl

[Scikit-learn-general] GridSearch

2012-02-03 Thread Mathias Verbeke
Hi all, I'm currently looking at the GridSearch example ( http://scikit-learn.org/0.9/auto_examples/grid_search_digits.html), and I don't completely get the point of using cross-validation twice. Why aren't the parameters and the classifier selected in on cross-validations step? Furthermore, I wa

Re: [Scikit-learn-general] Error - SVC for sparse vectors?

2012-01-30 Thread Mathias Verbeke
hon2.6/dist-packages/scipy/sparse/csr.py", line 299, in _get_row_slice raise IndexError('index (%d) out of range' % i ) IndexError: index (1) out of range Could this have something to do with the sparse vectors? Thanks, Mathias On Sat, Jan 28, 2012 at 9:12 PM, Olivier Gris

Re: [Scikit-learn-general] Error - SVC for sparse vectors?

2012-01-28 Thread Mathias Verbeke
Hi Oliver, Thanks, that works! Sorry for the dummy questions. Cheers and thanks again, Mathias On Sat, Jan 28, 2012 at 12:38 PM, Olivier Grisel wrote: > 2012/1/28 Mathias Verbeke : > > Hi Gael, > > > > Thanks for your quick answer. Your solution solved the error, but

Re: [Scikit-learn-general] Error - SVC for sparse vectors?

2012-01-28 Thread Mathias Verbeke
ne 230, in asarray return array(a, dtype, copy=False, order=order) ValueError: setting an array element with a sequence. Would you have any idea how this is caused? Thanks, Mathias On Sat, Jan 28, 2012 at 9:49 AM, Gael Varoquaux < gael.varoqu...@normalesup.org> wrote: > On S

Re: [Scikit-learn-general] cache_size for SVM

2012-01-27 Thread Mathias Verbeke
Ok, thanks a lot! Cheers, Mathias On Fri, Jan 27, 2012 at 2:45 PM, Andreas wrote: > ** > On 01/27/2012 02:34 PM, Mathias Verbeke wrote: > > Dear Andy, > > I'm currently using version 0.9. > > Then you should upgrade ;) > It is available in Version .10

Re: [Scikit-learn-general] cache_size for SVM

2012-01-27 Thread Mathias Verbeke
> Andy > > > On 01/27/2012 02:29 PM, Mathias Verbeke wrote: > > Dear all, > > When I want to set the cache_size of an SVM, using > > clf = svm.SVC(cache_size=200.0) > > I get: TypeError: __init__() got an unexpected keyword argument > 'cache_size',

[Scikit-learn-general] cache_size for SVM

2012-01-27 Thread Mathias Verbeke
Dear all, When I want to set the cache_size of an SVM, using clf = svm.SVC(cache_size=200.0) I get: TypeError: __init__() got an unexpected keyword argument 'cache_size', althought this should be possible according to the documentation. What am I doing wrong here? Or isn't this possible anymore

[Scikit-learn-general] Export gram matrix

2012-01-09 Thread Mathias Verbeke
Dear all, In the documentation of the SVM module, I saw that it was possible to pass your own Gram matrix to the kernel. I was wondering if it was also possible to do the reverse, i.e. to export the calculated Gram matrix (that gives the similarity between the train and test instances)? Best and

Re: [Scikit-learn-general] Other distance metrics for kNN

2012-01-05 Thread Mathias Verbeke
Hi, First, thanks for all the answers! Waauw, really interesting discussion. I have only basic Python skills, and never programmed in Cython (together with a lot of time constraints, as most of you probably), but I would like to give it a try to add new distance metrics to the brute force method.

[Scikit-learn-general] Other distance metrics for kNN

2012-01-04 Thread Mathias Verbeke
Dear all, I just started working with Scikit Learn and I'm currently using the Nearest Neighbors module. In the documentation is stated that it currently only supports the Euclidean distance metric, and I was wondering if it would be easy to extend it with other distance metrics? Since it uses the